Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2342 ATGGCTCAATTGCCACCAAAAATTCCAAACATGACACCCAATTGGCCAGACTTCTCTTCTCCTCACCAAAAGATGCCTTCCCTCAAAACCATGTCACCTAACCAAAACCCTTCATGGGTGGATGAGTTTCTTGAATTCTCCGCGGCGAGACGTGGGGCCCACCGGCGGTCGGTGAGCGACTCCATCACCTTCTTGGAGGCACCATTGCTGGACCACCATCATTGCAAAGGTGGCAGTGTTGGTGGTGGTGGCGGTAGCGGCGACAACGAGTTCGAGAGGTTTGATGATGAACAATTCATGTCCATGTTTAGTGATGAGGCTTCAGGGAATAATAATAATAATAATAATAATAATACCATGATGGAAAACGCGTTATCCTCTTCCAACCCTTCTACACCTTCCGATCACAACAGCATCAATGATGAGAAGGAAATGAACAACAAGGAAGAGGAAGGGAAGAAGCAAGTGAAGAATGAGTCCGAGGAGGATGAGGATGAAAGCCAATGCAAACAAGAAATCACGCAACTTCCCAACAATGATGATAGTAAAAACAATAGTAATGCAAATGCAACATGTTCTAGTGAGAAAATCACAGACCCCAAGAGGGTCAAAAGAATCTTGGCAAATAGACAATCTGCGCAAAGATCAAGAGTGAGGAAACTGCAATACATATCTGAGCTTGAGCGAAGTGTGACTTCATTACAGGCCGAAGTTTCAGTGTTGTCTCCACGGGTTGCATTTTTGGATCATCAACGTTTGCTTCTGAATGTTGACAATAGTGCTTTGAAGCAAAGAATCGCAGCGCTGGCCCAAGACAAGATTTTCAAAGATGCACATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTTAGGCAAGTTTATCACCAACAAAACATAAAGAAGATGGACAATGCTGCAGGGTCACCACCATCCCAATCCCCACCATCTCCATCACCAAAACCACGATGTGAAACTCACACTGAAAAGGAACAGCTTATCAATGTTTGA 1008 0.4454 MAQLPPKIPNMTPNWPDFSSPHQKMPSLKTMSPNQNPSWVDEFLEFSAARRGAHRRSVSDSITFLEAPLLDHHHCKGGSVGGGGGSGDNEFERFDDEQFMSMFSDEASGNNNNNNNNNTMMENALSSSNPSTPSDHNSINDEKEMNNKEEEGKKQVKNESEEDEDESQCKQEITQLPNNDDSKNNSNANATCSSEKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMDNAAGSPPSQSPPSPSPKPRCETHTEKEQLINV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2342 335 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 332 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 171 196 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 294 335 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 104 196 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 137 164 - -
Gso6g2342 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Gso6g2342 335 SUPERFAMILY Leucine zipper domain 201 255 IPR046347 GO:0003700|GO:0006355
Gso6g2342 335 CDD bZIP_plant_RF2 202 252 IPR044759 GO:0003700|GO:0006355
Gso6g2342 335 SMART brlzneu 197 261 IPR004827 GO:0003700|GO:0006355
Gso6g2342 335 Coils Coil 280 300 - -
Gso6g2342 335 Coils Coil 139 166 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 104 136 - -
Gso6g2342 335 PANTHER BASIC LEUCINE ZIPPER 34 1 332 - -
Gso6g2342 335 Gene3D - 200 271 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 13 34 - -
Gso6g2342 335 MobiDBLite consensus disorder prediction 1 34 - -
Gso6g2342 335 Pfam bZIP transcription factor 201 245 IPR004827 GO:0003700|GO:0006355
Gso6g2342 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 251 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2342 Gso-Chr6 44856134 44859674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2342 1 278 bZIP Transcription Factor Family AT3G58120 57.705 2.96e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso6g2342 bZIP_2 4.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2342 - - gmx:778128 595.119