Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2335 ATGAATGTCTTCGACAACGATCACGATGAAGAAACATTTGGTCAATACCATAGCAACGTGAACAGAACAATATTGTACGTGTCCATGGTTTCCTTCGCAATGGTCTTGTTCCTCGTCTTCGTTCTCTACCTCTACGCCCGGTGCGTCCTAAGGGGCAGGTCCCGCCACCGCGCCGCCATCCGCCGCCTCACCATCGCCGCGCTTCACGTCTCTGACCTCGACGCCGTCGCCGCCACACACCGCCACGCCGAACCACCAAACTCGGGGCTCGACCCTGCCATCATAGCGTCACTGCCAACCTTCGCCGTCAAGGCAAAGGTTTTAGAAGGTGGTTGCAGTGGCGCTACGGTGGTGGAGTGTGCCGTGTGCTTGAGTGCTCTAGAAGGCGAAGAAAAAGCCAAGTTGCTTCCGAATTGTAACCACTTTTTTCACGTGGATTGCATTGACACGTGGCTGGATTCCCACTCCACGTGTCCTCTTTGTCGAGCCGAGGTCAAACCTCGGCTCGAACCACAGGACCGCGAGGGTCCTGTTGGTCTTGCTATCGATGGTGCACCTCCACTTGGTGTAGGTGTTGATGGTGGTGGTGAATCATCCAAAATTAATGGTTCTAATTCGCGGATAAGCTCGTTTAGAAGGATTCTCAGTAGGGAAAGATCTTCAAGAAGAATCCAACCCTCTGGCTATGATGATGAGGATGGTGGTGTTGATCAAGATTTGGAAAGACAGTGA 732 0.5287 MNVFDNDHDEETFGQYHSNVNRTILYVSMVSFAMVLFLVFVLYLYARCVLRGRSRHRAAIRRLTIAALHVSDLDAVAATHRHAEPPNSGLDPAIIASLPTFAVKAKVLEGGCSGATVVECAVCLSALEGEEKAKLLPNCNHFFHVDCIDTWLDSHSTCPLCRAEVKPRLEPQDREGPVGLAIDGAPPLGVGVDGGGESSKINGSNSRISSFRRILSRERSSRRIQPSGYDDEDGGVDQDLERQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2335 243 MobiDBLite consensus disorder prediction 212 230 - -
Gso6g2335 243 MobiDBLite consensus disorder prediction 171 243 - -
Gso6g2335 243 PANTHER RING FINGER DOMAIN-CONTAINING 7 243 - -
Gso6g2335 243 SUPERFAMILY RING/U-box 97 170 - -
Gso6g2335 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 168 IPR013083 -
Gso6g2335 243 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Gso6g2335 243 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 7 243 - -
Gso6g2335 243 CDD RING-H2_PA-TM-RING 119 162 - -
Gso6g2335 243 Pfam Ring finger domain 119 162 IPR001841 -
Gso6g2335 243 SMART ring_2 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2335 Gso-Chr6 44806471 44807509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2335 4 243 C3H Transcription Factor Family AT2G42360 43.548 2.10e-54 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2335 K19038 - gmx:100783358 432.565