Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2334 ATGAGGACCAATGTAGGAGATATTGTTCAAGTAGAAGGAGGGCACATTGTTAGGTCCACAGGTAGAAAAGATCGCCACAGCAAGGTGTACACATCGAAAGGGCCACGCGATCGTCGCGTTAGACTCTCGGCACACACAGCCATTGAGTTCTATGATGTTCAAGACAGGCTTGGCTATGACAGGCCAAGCAAGGCTGTGGACTGGCTCATCAAAAAGGCAAAGACTTCCATTGACAAGCTTGCTGAGCTTCCTCCTTGGCATCCACCTACTAATCATGAGGAAGAAGAGCAGAATGATGCTGCAGGATCAAGTGGAGTCATAGCCATTGAACAACAACAACAGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACATCAACAGCAACAATCAGAGTCTTGTGGTTACAACTTTCAGCTCCAAAGGCAATTGGGAGCCTTCATTTCAACACATGTTGACACTGACCACATCAATTTCCAAACCAACAACAACAACTCCTCAGAAGATCTTGGCCTATCCCTCCATTGCTTCCAAGACCACCCTGGCCTTATTCAGTGGCAATCACAACAAGAAGGTGCAAATCAAACACCTCCTTCAAATGAACACCAAATCCAGCAAACCCCTTTTGCCGGATCAACCCCAGTTGGGTTTGAGAACCATTATCAAAGAAGTGTGACTTGGAACAATGAAGCAACAACCACAGATCATGTCAACAGGTTGGGGTTCTTATTCAACTCACAGCCTTATGCTTCAGCTTATGCTCAAAGTGGGGGGACCCTTCAGTCCAGTTTTTCATTTCCAATGACTTCTTCCTCTGAGCTTCACAGGCCTCAGCCAGTGAACCAACCTTCTTCAATCTTTGGCAGCAGGTTTGTGTCTGATGGATTAGCTGGTTTCTGCATTCCAGATAGAATTCAAGGTGTGGAAGAGAATCATGGAGTTGCTTCCAATAGGCCTTCTTCTTCTCCTAGTTCTATCCACTGA 1002 0.4591 MRTNVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELPPWHPPTNHEEEEQNDAAGSSGVIAIEQQQQQQQQQQQQQQQQQQQQQHQQQQSESCGYNFQLQRQLGAFISTHVDTDHINFQTNNNNSSEDLGLSLHCFQDHPGLIQWQSQQEGANQTPPSNEHQIQQTPFAGSTPVGFENHYQRSVTWNNEATTTDHVNRLGFLFNSQPYASAYAQSGGTLQSSFSFPMTSSSELHRPQPVNQPSSIFGSRFVSDGLAGFCIPDRIQGVEENHGVASNRPSSSPSSIH* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2334 333 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Gso6g2334 333 Pfam TCP family transcription factor 21 138 IPR017887 -
Gso6g2334 333 PANTHER TRANSCRIPTION FACTOR TCP4 3 330 - -
Gso6g2334 333 MobiDBLite consensus disorder prediction 273 292 - -
Gso6g2334 333 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 330 IPR005333 GO:0003700
Gso6g2334 333 Coils Coil 106 138 - -
Gso6g2334 333 MobiDBLite consensus disorder prediction 80 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2334 Gso-Chr6 44798212 44801463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2334 5 330 TCP Transcription Factor Family AT1G53230 37.158 1.35e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso6g2334 TCP 3.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2334 - - gmx:100782826 617.461