Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2326 ATGGAAATGGAAGATTTTTTATGGGGTGGTGGCATTGATGAAGATGTCACCAAGAGGAAAAGTGATGGTTTTGAAGGAAGCAATGGTGTGATTGGAAGTGGGTGGTGTGGTTCATCTTTCTCTCTGGTATTGGATAGGGAGAGAGGGGAGCTTGTGGAGGAACCTGTGAGATTGGAAAAGAAAGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAAAAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTGATTCCGGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAGAAGAATGCAGCACAAGCTTGTGAGGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGATTGTTGTCTGATATAAAACAAGCACTAGATGCTCTCCATCTTATGATAACAAGGGCAGATATTGCAACCTTGGAAGGCAGGATGAAGAATGTCTTTGTGATAATTAGTTGCAAAGAACAGAACTTTGAAGATGCCGCATACCGTCAGTTTCTTGCCGTTTCTGTTCACCAAGCTCTCAAGTCTGTGCTCAATAGATTTTCTGTTTCGGAGGACATTTTAGGAACCAGGAAAAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTTTTGTAA 780 0.4115 MEMEDFLWGGGIDEDVTKRKSDGFEGSNGVIGSGWCGSSFSLVLDRERGELVEEPVRLEKKGVSTERSIEALKSHSEAERKRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKKNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIKQALDALHLMITRADIATLEGRMKNVFVIISCKEQNFEDAAYRQFLAVSVHQALKSVLNRFSVSEDILGTRKRRRISIFSSSSLEDFL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2326 259 CDD bHLH_AtAIG1_like 65 141 - -
Gso6g2326 259 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 258 - -
Gso6g2326 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Gso6g2326 259 PANTHER TRANSCRIPTION FACTOR BHLH30 3 258 IPR045847 GO:0003700|GO:0006355
Gso6g2326 259 Gene3D - 65 127 IPR036638 GO:0046983
Gso6g2326 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 123 IPR036638 GO:0046983
Gso6g2326 259 CDD ACT_UUR-ACR-like 158 200 - -
Gso6g2326 259 Pfam Helix-loop-helix DNA-binding domain 74 119 IPR011598 GO:0046983
Gso6g2326 259 SMART finulus 76 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2326 Gso-Chr6 44654246 44656483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2326 67 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.398 1.17e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g2326 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2326 - - gmx:100784966 482.641