Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2295 ATGGAAGAGACACGAGAAGATGCCGGGCAACCAGAGCGAAGGCCATCCAACATGTCATGGTGGCCTTCAGATTTTGTTGACAAATTCGAATCTGTTTCTTTGAGCGCTCAAGATGAAACCTTAAATAATAAAGAATCACCTAGACATTCTAACCAGGATGTTATGTCACCTCAGAAGGCGTCACAAATCCTGTGGCGCACTGGAATGCTTTCAGAACCAATACCCAATGGTTTTTATTCAGTCATTCCGGAGAAAAGACTCAAGAAACTTTTTGATAGTATTCCTACTTTGGATGAGCTTCAAGCTATGGGTGGAGAAGGTTTTAGGGCTGATGTCATTGTTGTGGATGCAGAGAAAGATAGAAGGTTATCTATGTTGAAGCAACTAATTGTGGCATTAGTTAGAGGATTGAATTCAAATCCACCTGCGATGATTAAGAAGATAGCTGGATTAGTTTCTGACTTTTATAAGCCCCCAAATGTTGAAAGTCCAGCAAAAGCTGCACTTGAGGAATCATGCAACATGTTTGAGAATCGTGGTGTCCAGATGCTGGGGCAAATCAGGCACGGTTCATGCTGTCCTCGAGCTATCTTATTTAAAGTATTAGCAGATAGTGTAGGTCTTGAAAGTAGGCTTATGATGGGTTTTCCAAATGATGGAGCTGCTGAATGTGTAGACTCTTACAAGCATATGTCAGTGATAGTTGTGTTAAATACTGTGGAACTGCTGGTTGATCTTATGCGTTTTCCTGGCCAATTATTACCACGATCAACCAAGTCAATTCTTATGACACATATTTCTGCAGCAGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCATTAGAACCAAATAGTCCTTTATATGGGGTTTCAGAGAGTGTTGAAAAGGAGGAAAACCTCCAATTCCATAGAAGATTTGAAGTGTCTTCAAATGTATCAGGCCTTCCCCTGCGAAATATGATGTTACGATCAAATACCAGTCTGGACAGGAATTTGAGTTTTTCTCATAGTGAACCCAACATTGCAACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACTGCTAGTTCAAGTCCAGAACATCCATCATTGCGAGCTCATGGACGGTCCAAGCTTAGTGGTGACAGGACTGCTTTTAGAGATTTTGCTGATGACCAGTCTACACTAAGATCCAGCTACAAGTCAGATGGTGCTTCCTCATCAGAAGCTCGTAGGATACGAAGAAGTATCAGCATTACACCAGAGATTGGTGATGATATTGCTAGGGCTGTCCGGGCGATGAATGAAACATTAAAGCAAAATCGTCTTCTGAGAGAGCAGGGGGGTGATAGTTCATTGTCTCATTCTCCAATTGATAGAACCAGCAGTGCAGATCTTCAGAAAAATGTGTCAAATTTCCATCTTGATAATCACCATGAGAGGTCCCCCTTATATTTGCGTGACCCTGTGACGTCTCAAAAGGCAATGTCGTTACCCTCTTCTCCGCATGATTATAGAGGACAAGCTTCTGAGAGAAGCAAGGCGTCAGAATATATATTGAATGATGAACTGGAGTTTACTTGGAATAAAATCCTTGAATCACCAATGTTCAGTAATAGACCTCTGTTACCATATGAAGAATGGAATATTGATTTCACAGAATTGACTGTTGGAACTCGTGTTGGAATTGGGTTCTTCGGAGAAGTTTTTCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTCCTAGAGCAAGATTTAACTACTGAAAACATGGAAGATTTCTGCAATGAGATATCCATTCTTAGTCGGCTTCGACATCCTAATGTTATTTTATTTCTTGGTGCCTGCACAAGGCCCCCACGCTTGTCAATGGTGACTGAATACATGGAGATGGGATCTTTGTTTTACTTGATTCATGTGAGCGGTCAAAAGAAGAAGCTTAGCTGGCGGAGAAGACTAAAGATGTTGCAGGATATATGCCGTGGCCTGATGCACATACATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCAAATTGCCTTGTGGACAAGCATTGGATAGTGAAAATATGTGATTTTGGACTTTCAAGAATAGTAACAGAATCCCCCACGAGAGATTCCTCGTCAGCTGGAACCCCAGAATGGATGGCTCCTGAACTAATTCGAAATGAACCATTCACTGAAAAGTGTGATATCTTTAGCTTTGGGGTGATAATATGGGAGCTCTGCACCTTGAATAGGCCTTGGGAAGGCGTACCTCCGGAGAGGGTGGTTTATACCGTTGCTAATGAGGGTGCTCGATTGGATATTCCTGATGGCCCGCTAGGCAGGCTGATTTCAGAGTGTTGGGCGGAACCACATGAACGGCCAAGTTGTGAGGAGATTCTCTCTCGATTGGTGGACATCGAGTACTCAATGTGTTGA 2439 0.4256 MEETREDAGQPERRPSNMSWWPSDFVDKFESVSLSAQDETLNNKESPRHSNQDVMSPQKASQILWRTGMLSEPIPNGFYSVIPEKRLKKLFDSIPTLDELQAMGGEGFRADVIVVDAEKDRRLSMLKQLIVALVRGLNSNPPAMIKKIAGLVSDFYKPPNVESPAKAALEESCNMFENRGVQMLGQIRHGSCCPRAILFKVLADSVGLESRLMMGFPNDGAAECVDSYKHMSVIVVLNTVELLVDLMRFPGQLLPRSTKSILMTHISAAGESDSAENDSCDSPLEPNSPLYGVSESVEKEENLQFHRRFEVSSNVSGLPLRNMMLRSNTSLDRNLSFSHSEPNIATAFGRRSRRKVIAEQRTASSSPEHPSLRAHGRSKLSGDRTAFRDFADDQSTLRSSYKSDGASSSEARRIRRSISITPEIGDDIARAVRAMNETLKQNRLLREQGGDSSLSHSPIDRTSSADLQKNVSNFHLDNHHERSPLYLRDPVTSQKAMSLPSSPHDYRGQASERSKASEYILNDELEFTWNKILESPMFSNRPLLPYEEWNIDFTELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTTENMEDFCNEISILSRLRHPNVILFLGACTRPPRLSMVTEYMEMGSLFYLIHVSGQKKKLSWRRRLKMLQDICRGLMHIHRMKIIHRDVKSANCLVDKHWIVKICDFGLSRIVTESPTRDSSSAGTPEWMAPELIRNEPFTEKCDIFSFGVIIWELCTLNRPWEGVPPERVVYTVANEGARLDIPDGPLGRLISECWAEPHERPSCEEILSRLVDIEYSMC* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2295 812 Pfam Protein tyrosine and serine/threonine kinase 557 804 IPR001245 GO:0004672|GO:0006468
Gso6g2295 812 SUPERFAMILY Protein kinase-like (PK-like) 532 804 IPR011009 -
Gso6g2295 812 PRINTS Tyrosine kinase catalytic domain signature 630 643 IPR001245 GO:0004672|GO:0006468
Gso6g2295 812 PRINTS Tyrosine kinase catalytic domain signature 669 687 IPR001245 GO:0004672|GO:0006468
Gso6g2295 812 PRINTS Tyrosine kinase catalytic domain signature 716 726 IPR001245 GO:0004672|GO:0006468
Gso6g2295 812 PRINTS Tyrosine kinase catalytic domain signature 735 757 IPR001245 GO:0004672|GO:0006468
Gso6g2295 812 SMART serkin_6 556 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2295 812 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 27 810 - -
Gso6g2295 812 MobiDBLite consensus disorder prediction 492 512 - -
Gso6g2295 812 Coils Coil 428 448 - -
Gso6g2295 812 MobiDBLite consensus disorder prediction 1 22 - -
Gso6g2295 812 MobiDBLite consensus disorder prediction 359 386 - -
Gso6g2295 812 MobiDBLite consensus disorder prediction 395 414 - -
Gso6g2295 812 ProSitePatterns Protein kinases ATP-binding region signature. 562 583 IPR017441 GO:0005524
Gso6g2295 812 MobiDBLite consensus disorder prediction 36 58 - -
Gso6g2295 812 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 810 - -
Gso6g2295 812 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
Gso6g2295 812 MobiDBLite consensus disorder prediction 372 386 - -
Gso6g2295 812 CDD STKc_MAP3K-like 562 804 - -
Gso6g2295 812 ProSiteProfiles Protein kinase domain profile. 556 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2295 812 Gene3D Phosphorylase Kinase; domain 1 549 634 - -
Gso6g2295 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672|GO:0006468
Gso6g2295 812 Gene3D Transferase(Phosphotransferase) domain 1 635 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2295 Gso-Chr6 44202842 44212144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2295 1 812 MAP Kinase Kinase Kinase AT3G58640 68.735 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Gso6g2295 PK_Tyr_Ser-Thr 4.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2295 - - gmx:100806527 1628.99