Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2290 ATGTCAGGTGTTGGCCCTCTTTCTCAAGATTGGGAACCCGTCGTCCTCCGCAAGAAGGCTCCCACTGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCCCGCCGCTCCGGCGCCGAAATCGAAACCCTAAAAAAATATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCATGAGAAGGTACCGACTGAACTTAAGAAGGCCATAATGCAAGCTAGGATGGACAAGAAACTTACTCAGTCTCAGCTTGCTCAACTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGAAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAGCTAAATTGCGTGGCAAGAAATAA 429 0.4895 MSGVGPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGAEIETLKKYNAGTNKAASSSTSLNTKRLDDDTESLAHEKVPTELKKAIMQARMDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2290 142 Coils Coil 87 107 - -
Gso6g2290 142 MobiDBLite consensus disorder prediction 51 75 - -
Gso6g2290 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Gso6g2290 142 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1A 1 142 - -
Gso6g2290 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Gso6g2290 142 CDD HTH_XRE 85 135 IPR001387 -
Gso6g2290 142 Gene3D - 71 142 IPR010982 GO:0003677
Gso6g2290 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Gso6g2290 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Gso6g2290 142 Coils Coil 142 142 - -
Gso6g2290 142 SMART mbf_short4 86 141 IPR001387 -
Gso6g2290 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2290 Gso-Chr6 44137695 44140350 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Gso6g2290 MBF1 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2290 K03627 - gmx:100804567 274.633