Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2285 ATGGCCTCCTTGCCCTTGGGGCACCACCACCATCACCAACCGGCGGCGGCGACTATACACCCGTCGCAACCGCCGCAGTGTCAGCCGCAACCCGAAGTTCCTCGCCGGAGCTCCGATATGGAGACCGATAAGGATATGTCAGCTACTGTCATTGAGGGGAATGATGCCGTTACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGGGAACCTAAACAGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGCTTGGAGACTGGAGAGGCAGTGGCTATTAAAAAGGTCTTGCAAGACAGGCGGTACAAAAATCGTGAATTGCAGTTAATGCGCTTAATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTTTCCACAACAAGCAAAGATGAACTTTTTCTAAACTTGGTAATGGAATATGTCCCTGAGTCAATGTACCGAGTTATAAAGCATTACACTACTATGAACCAGAGAATGCCTCTCATCTACGTGAAACTGTATACATATCAAATCTTCAGGGGATTAGCATATATCCATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTTAAGCTATGCGATTTTGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACTGAATACACACCTTCTATTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGCCATTGTTTCCTGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCGACTCGAGAGGAAATCCGTTGCATGAACCCAAATTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTGCGCTGCACTGCGCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATGCCCGTCTTCCTAATGGCCATCCACTGCCCCCACTTTTCAACTTCAAACAGGAGTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCATATTAGGCGGCAGATGGGTCTCAGCTTCCCGCATTCTGCCGGTTCATAG 1260 0.4627 MASLPLGHHHHHQPAAATIHPSQPPQCQPQPEVPRRSSDMETDKDMSATVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSKDELFLNLVMEYVPESMYRVIKHYTTMNQRMPLIYVKLYTYQIFRGLAYIHTALRVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTPSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGHPLPPLFNFKQELAGASPELINRLIPEHIRRQMGLSFPHSAGS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2285 419 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA-LIKE 20 413 - -
Gso6g2285 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Gso6g2285 419 CDD STKc_GSK3 74 366 IPR039192 -
Gso6g2285 419 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 20 413 - -
Gso6g2285 419 MobiDBLite consensus disorder prediction 1 43 - -
Gso6g2285 419 SUPERFAMILY Protein kinase-like (PK-like) 78 387 IPR011009 -
Gso6g2285 419 ProSiteProfiles Protein kinase domain profile. 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2285 419 ProSitePatterns Protein kinases ATP-binding region signature. 85 109 IPR017441 GO:0005524
Gso6g2285 419 SMART serkin_6 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2285 419 Gene3D Phosphorylase Kinase; domain 1 64 158 - -
Gso6g2285 419 Gene3D Transferase(Phosphotransferase) domain 1 159 406 - -
Gso6g2285 419 Pfam Protein kinase domain 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2285 Gso-Chr6 44075208 44080246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2285 83 401 MAP Kinase Gene Family AT3G59790 35.030 3.37e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso6g2285 Pkinase 4.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2285 K14502 - gmx:100802451 850.506