Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2276 ATGAAGCAATATTTGCACCCCGAAAAAGAAAAGTATTTTACATCATCAATTGAAGAGGAAGGTGAAATCACCATGAGCCGCAACATCAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACGGATCTCACTCTACTCATGCCACCGATGGCAGAAGTTCGGGTGTATTAGCTCGACAACGATTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAGGATATGGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCAGTGGTAGAAATTACCAAATCAACAGCTTTGAGCAAGCTTAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCTGCAAAGCCTTTGAAAGAGAAGCAGAGAGAAAATGATGAAGATAGCAAGAGCTGTGCTATTTGTTTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATAGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGTATGACTTACTAA 861 0.4181 MKQYLHPEKEKYFTSSIEEEGEITMSRNINNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYGSHSTHATDGRSSGVLARQRFSDFRNPLGFHSIPNFPAPPPRRQQIHAHNEDMGRLREIFLHPPQRSTFQTSTQALPVVEITKSTALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQRENDEDSKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGSMTY* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2276 286 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 26 286 - -
Gso6g2276 286 SMART ringv_2 194 236 IPR011016 GO:0008270
Gso6g2276 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 243 IPR013083 -
Gso6g2276 286 SMART ring_2 195 235 IPR001841 -
Gso6g2276 286 Pfam Ring finger domain 194 236 IPR001841 -
Gso6g2276 286 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Gso6g2276 286 SUPERFAMILY RING/U-box 186 242 - -
Gso6g2276 286 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 26 286 - -
Gso6g2276 286 CDD RING-H2_PA-TM-RING 195 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2276 Gso-Chr6 43897566 43899264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2276 150 283 C3H Transcription Factor Family AT3G58720 48.571 9.82e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2276 - K19041 gmx:100810607 598.586