Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2258 ATGAGCCGCAACATGAACAATTTCACACCTTTGCCAGGGTCATGGCAAAGAGGTTTTAGATCCTTTGATGACCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGCCACCCAGGATGGCAGAAGTTCGTGTGTATTAGCTCGAGAACGATTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCTGCACCACCACCTAGAAGACAACAAATTCATGCTCACAATGAGGATATCGGAAGGCTAAGAGAGATTTTCCTTCACCCCCCTCAAAGATCCACATTCCAAACAAGCACACAAGCTCTCCCGGTGGTAGAAATTACCAAATCAACAGCTTTGAGCAAGCTCAAGAAAGTAGTCTATGACCCTCCCCCAAAGAGGTATGCTAGGAGGGTGAGCTTATACTACAGAAACAATGCCGCAAAGCCTTTGAAAGAGAAGCAGGGAGAAAATGATGAAGATAGAAAGAGTTGTGCTATTTGTCTAGAAGATTTTGATCCCAGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGTATAGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATTGGAAGGGGGAATCATTCATCCTTCAATAACAATGACATTGCAAATTTGGAACCTAGCAACTTGATTAATGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGAAGAATGACTTACTAA 792 0.4268 MSRNMNNFTPLPGSWQRGFRSFDDHTFNHRESNEVPVFYRSHSTHATQDGRSSCVLARERFSDFRNPLGFHSIPNFPAPPPRRQQIHAHNEDIGRLREIFLHPPQRSTFQTSTQALPVVEITKSTALSKLKKVVYDPPPKRYARRVSLYYRNNAAKPLKEKQGENDEDRKSCAICLEDFDPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEIGRGNHSSFNNNDIANLEPSNLINGELLSILRAMEEAFQLGRMTY* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2258 263 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Gso6g2258 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 220 IPR013083 -
Gso6g2258 263 CDD RING-H2_PA-TM-RING 172 213 - -
Gso6g2258 263 SUPERFAMILY RING/U-box 166 219 - -
Gso6g2258 263 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 263 - -
Gso6g2258 263 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 263 - -
Gso6g2258 263 Pfam Ring finger domain 171 213 IPR001841 -
Gso6g2258 263 SMART ring_2 172 212 IPR001841 -
Gso6g2258 263 SMART ringv_2 171 213 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2258 Gso-Chr6 43725040 43727057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2258 127 259 C3H Transcription Factor Family AT3G58720 48.921 7.99e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2258 - K19041 gmx:100802085 540.806