Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2250 ATGGCTACTACCATAACAGAGCAAGAAGCCTCATCACGTGCCCCGCACGTGCTCGACTACGCCACCACTACATCCGACGACGACACGGAAAAGGAGGAGGAGGAGCTGGTACACGAGCAAAACGAATCCTCCGGCGGAGGGCGGTGGTTTCCGGCGGCGTGCGGTGGCGGCACGCGGCGGAGCGGGGGAGGCGCGTTAGGGCGAGTTCTTGACCCAAGGGCGAAGTGGGTCCAGGAATGGAACAGGGTGTTCCTGCTAGTGTGCGCCGCGGGGTTGTTCGTTGACCCTCTCTTCTTCTACGCGCTCTCCGTCAGCGACTCGTGCATGTGCGTCTTCGTTGACGGGTGGCTCGCCGTCACCGTCACGGTGCTGCGGTGCATGACCGACGCACTGCACGTGTGGAACATGGTTATAAGGTGCAAGATGGCGAAACGCACCTTCGGACTCGGCGCCTCCACCACTTCTTCCGGCAGAGGAACATCCTCGTCCTCTGTCGGACTCAGAGATACCCGACCGCGTTCCGTCGCGATGGGATATCTCATGTCACGGACCGGATTCTTTTTTGATCTGTTCGTTATTCTTCCTCTACCACAGATTGTACTATGGGTGGCAATCCCCTCCTTGTTGGAGAAAGGTTCAGTGACATTGGTGATGACAGTGTTCTTAATTATCTTTCTCTTCCAATACCTTCCCAAAATTTTTCATTCGGTTTGCCATTTGCGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATCGCGTATTTTGTTGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTAGGGATACAAAGGGCAGCCAAGTGTCTCAAAGTGCAGTGTGAGAAAACAAGTGGTTGTGGCATGAAAATCTTGTCTTGTCAAACACCCATATATTACGGAAGCAACAGTTTTCTAGTTAGGGATAGGGCAAGGTTGGCTTGGGCAGAGAACAGGGAAGTGAGACACACATGCCTAAATGGTCCTGACAACTACAACTATGGAGCTTATAGATGGTCTGTTCAGCTTGTCACAAACGATAATCGATTGGAGAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGAAACCTAGAGAGTACAACCGAATGGCTGGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTCACCATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAAAAGCAAGCAATGCAATTGAAGATGAGGAATATTGAATGGTGGATGAGGAAACGACGCTTGCCGCTAGGGTTTAGGCAGCGCGTGCGTAACTATGAGAGGCAACGTTGGGCTGCCATGCGTGGGGTTGATGAATTTGAGATGACTAAAAATCTTCCTGAGGGATTAAGAAGAGACATTAAATACCATCTTTGTCTAGACTTGGTGAGACAGGTGCCTCTATTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCTCTGATATTCACAAAGGGAGAAACAATAGCTAGAGAAGGAGACCCAGTTCAGAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTCCTAAGGGATGGTGTGAAGAGTTGTTGCATGTTAGGTCCAGGAAACTTCAGTGGGGACGAACTCCTCTCATGGTGTTTAAGGAGACCCTTCATAGAACGCCTTCCACCATCTTCATCCACACTCATCACGTTGGAAACCACCGAGGCTTTTGGCCTTGAAGCCGAGGATGTGAAGTATGTGACACAACATTTTAGGTACACATTTGTTAAGGAGAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAATTGGCATGGAGGAGGTACAAGCATAGGTTGACTTTGACTTCATTGTCCTTTATAAGGCCTAGGAGGCCTTTGTCAAGGTCTTCTTCCATGGGAGAGGACAGGCTTCGCCTCTACACGGCTTTGTTAACCTCCCCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2076 0.4942 MATTITEQEASSRAPHVLDYATTTSDDDTEKEEEELVHEQNESSGGGRWFPAACGGGTRRSGGGALGRVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHVWNMVIRCKMAKRTFGLGASTTSSGRGTSSSSVGLRDTRPRSVAMGYLMSRTGFFFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIFHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCEKTSGCGMKILSCQTPIYYGSNSFLVRDRARLAWAENREVRHTCLNGPDNYNYGAYRWSVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPLGFRQRVRNYERQRWAAMRGVDEFEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2250 691 Pfam Ion transport protein 80 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso6g2250 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 688 - -
Gso6g2250 691 Gene3D Jelly Rolls 492 610 IPR014710 -
Gso6g2250 691 MobiDBLite consensus disorder prediction 1 46 - -
Gso6g2250 691 Gene3D Helix hairpin bin 419 485 - -
Gso6g2250 691 Pfam Cyclic nucleotide-binding domain 515 602 IPR000595 -
Gso6g2250 691 CDD CAP_ED 494 600 IPR000595 -
Gso6g2250 691 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 23 688 - -
Gso6g2250 691 SUPERFAMILY Voltage-gated potassium channels 72 415 - -
Gso6g2250 691 ProSiteProfiles cAMP/cGMP binding motif profile. 494 604 IPR000595 -
Gso6g2250 691 SUPERFAMILY cAMP-binding domain-like 420 608 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2250 Gso-Chr6 43504033 43515074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2250 54 690 Ion Channels AT5G54250 78.019 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2250 K05391 - gmx:100796761 1343.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1113 12 15459082 15472863 Gso6g2250 6 43504033 43515074 GST