Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2226 ATGAAGTTTGATTCTATATTCCAACACACCAACCTACATTCCGGCATAATAATACTAAACTTTTTTCTTCTAATGGCTGAAACATTTTCCGGTGCATCCAGATACGATGTGTTCATTAACTTCAGAGGGGAAGACACACGTCATGGATTTACCGGGCATCTCTACAAAGCTCTTCGTGACAAGGGAATCCGTGCTTTCATGGATGAAAATGACATTCAGAGAGGAGAAGAAATAAGAGCAACACTTGAGGAGGCAATTAAAGGGTCGAGGATTGCCATCACTGTGCTCTCTAAAGACTATGCGTATTCCTCATTTTGCTTAGATGAACTTAAAACCATCCTTGGCTGCTACCGCGAGAAAACTCTGTTGGTTATTCCTGTCTTTTATAAGGTGGATCCTTCTGATGTAAGACGCCTGCAAGGAAGTTATGCAGAAGGATTGGCTAGGCATGAGGAAAGGTTCCATCCTAACATGGAGGATTGGAAGAAGGCACTGCAGAAAGTACCAGAATTGGCTGGGCATCATTTCAAAGATGGAGCTGGATATGAATTCGAGTTTATTGGGAAGATTGTTGATGATGTCTTCCTCAAGATTAATGAAGCTGAAGCAAGCATATCTGTTGCAGATCGCCCGGTTGGATTAGACTCACAAGTGGATACAATTAGAAAATCTGTTAATCCTGGATCTAGAGATGCTATCTCCATGATAGGGATCCATGGTATGGGCGGGGTAGGAAAATCAACACTTGCTCGACATGTTTATAATTTGCATAAGAATGATTTTCATGGTTCGTGTTTCCTACAAAACGTAAGAGAAGAATCAAACAGAAAAGGGCTAAAACACCTACAAAGCATCCTTCTTTTACAAATATTTAAGGAGGACATCAACTTAGAAAGTGAGCATCAAGGAACTTCGATGATAAAAAATAAGCTCAGAGGAAAGAAGGTTCTCTTAGTTCTAGATGATGTTGATGAGCACAAGCAATTACAGGCATTTGTTGAAAAATCTGATTGGGAGTCTGAGTCTATGCCTGGCACCAGAGTGGTTCTGATCATCACCACTCGGGACAAACAACTCCTAACATCTTATGGGGTCGAAATAACACATGAGGTGGGAGAATTGAGTGAGACTGATGCTATTGAATTGCTTAAACGGAAAGCTTTTAATACATATAAAGAAAGTTACAAACAGGTCTTGAAAGATGTAGTAACTTGGACTTCTCGCCTTCCATTGACTTTGGAAGTCATAGGTTCGAACCTGTTTGAAAAAACTATTGAAGAATGGGAATCAGCTATCAAACAATATCAAAGAATTCCCAATAAGAAAATCTTGAAGATACTTAGAGTAAGCTTTGATGCTTTGGAGGAAGAAGAAAAAAGTGTTTTTCTTGACATTACTTGTTGCTTGAAAGGCTATAAATGGAAAGAGATTGAAGATATACTTCACCTTCTTTACGACAACTGCATGAAATACCATATTGGGGTGCTTGTTGACAAGTCTCTCATTAAGATTAGAGACGATGATGAAGTTATAGTGCATGACTTGATTGAGAACATGGGTAAAGAGATTGACAGGCAGGAATCACCGAAAGAGGCAGGCAAGCGGAGGAGATTATGGTTACAAAAAGATATAATTCAAGTTTTAAAAGACAACTCGGGGACCAGTGAAGTTAAAATCATTCGTCTGGATTTCCCCATATCTGACAAACAAAAAACAATAGAATGGGATGGAAATGCCTTACAGGAGATGAAAAACCTTACAGCACTTATTATCAGAAACGGTATTTTATCCCAAGCTCCCAATCATCTACCAGAAAGTTTGAGAATATTGGAATGGCACAGACATCATTTGCATTGTCCACCGTCTGATTTTGATACAACGAAGCTTGCCATACGCCACTTCTAG 1905 0.3932 MKFDSIFQHTNLHSGIIILNFFLLMAETFSGASRYDVFINFRGEDTRHGFTGHLYKALRDKGIRAFMDENDIQRGEEIRATLEEAIKGSRIAITVLSKDYAYSSFCLDELKTILGCYREKTLLVIPVFYKVDPSDVRRLQGSYAEGLARHEERFHPNMEDWKKALQKVPELAGHHFKDGAGYEFEFIGKIVDDVFLKINEAEASISVADRPVGLDSQVDTIRKSVNPGSRDAISMIGIHGMGGVGKSTLARHVYNLHKNDFHGSCFLQNVREESNRKGLKHLQSILLLQIFKEDINLESEHQGTSMIKNKLRGKKVLLVLDDVDEHKQLQAFVEKSDWESESMPGTRVVLIITTRDKQLLTSYGVEITHEVGELSETDAIELLKRKAFNTYKESYKQVLKDVVTWTSRLPLTLEVIGSNLFEKTIEEWESAIKQYQRIPNKKILKILRVSFDALEEEEKSVFLDITCCLKGYKWKEIEDILHLLYDNCMKYHIGVLVDKSLIKIRDDDEVIVHDLIENMGKEIDRQESPKEAGKRRRLWLQKDIIQVLKDNSGTSEVKIIRLDFPISDKQKTIEWDGNALQEMKNLTALIIRNGILSQAPNHLPESLRILEWHRHHLHCPPSDFDTTKLAIRHF* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2226 634 PRINTS Disease resistance protein signature 235 250 - -
Gso6g2226 634 PRINTS Disease resistance protein signature 310 324 - -
Gso6g2226 634 PRINTS Disease resistance protein signature 406 420 - -
Gso6g2226 634 ProSiteProfiles TIR domain profile. 33 198 IPR000157 GO:0007165
Gso6g2226 634 SUPERFAMILY "Winged helix" DNA-binding domain 441 549 IPR036390 -
Gso6g2226 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 465 IPR027417 -
Gso6g2226 634 Pfam TIR domain 35 204 IPR000157 GO:0007165
Gso6g2226 634 Gene3D - 30 200 IPR035897 -
Gso6g2226 634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 632 IPR044974 GO:0006952
Gso6g2226 634 SMART till_3 34 171 IPR000157 GO:0007165
Gso6g2226 634 Gene3D - 373 455 IPR042197 -
Gso6g2226 634 Pfam NB-ARC domain 234 443 IPR002182 GO:0043531
Gso6g2226 634 Gene3D - 201 367 IPR027417 -
Gso6g2226 634 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 173 IPR035897 -
Gso6g2226 634 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 37 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2226 Gso-Chr6 43098644 43101354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2226 29 629 WRKY Transcription Factor Family AT4G12020 26.537 4.55e-45 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2226 - - gsj:114417042 1270.37