Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2225 ATGTCTAATCCAGATAGGGTTCATGAGGCTAATTTCGCGTGTGGAGAAGGCCTTTTCGAGGAGCAAGGCACTGGAGTGAGTGAAGAGGGCTCGGACATTAGTGCTGAGAGCGAAGGCGGCATTGTTCTTGTCGTCGAGCGAAGGGACGGACGACGGAGTAATGCCAAGCATGTCGCGGGCGTTGTCGGAGTAACCGAGGATGCGAAAGGGGGGCTCGTCAATGGCGATCATGGAGCCAAAGGGCTAGATGAAGCCGCTGCGCTGGATTTTGACAAGGTAAGCCATTATTTGCTGCTCGGGGACGGAGTAGTTGAAGGACCTCCCGAACTCACTGGACTGCTCGAAGACAATGTGGAGCCGCGTGTCCTCCATGTACTGCGCGATGGGCTTGCTCCCGAACTCTCTCTTTCTATAAAGCAAATTGGAAAAATAAAGAAAGAAGCGTTTCTTTCTACAATTATTAGCTTTATAATATTTCTTCACTGCCCACAGTTATTGTCCTCGCAATACGCTTCTGCAATTGCAATGGCTTCTTCTTCATCTCATGCGATCATCACTAAATATGATGTGTTTGTCAGCTTCCGCGGTGAAGACACGCGCAACAACTTCAGTGCTTTTCTCTTTGAGGCTCTCTTTGAAAATGGCATCCATGCCTTCAAAGATGATACACATCTTCAGAAAGGCGAATCCATAGCACCCGAGCTGCTACAGGCCATTCAAGGGTCTCGCCTTTTCCTTGTGGTCTTCTCTAAGAACTATGCTTCCTCAACTTGGTGCTTGCGTGAACTTGCACACATCTGCAACTGCACTATTAAAGCATCCCTGAGTCGTGTTCTTCCAATTTTTTATGATGTCGATCCATCAGAGGTGCGGAAACAGAGTGGTTATTATGGGATAGCCTTTGCAGAACACGAACGAAGATTCAGAGGAGATAAAGAGAAGATGGAGGAAGTGCAGAGATGGAGAGAAGCTCTGACACAAGTGACCAACCTCTCTGGCTGGGATATCCGACATAGGTCACAACCTGCAATGATTAAAGAAATTGTTCAAAAAATAAAAAATATATTGGGTCCCAAATTTCAAAATCTTCCAAATGATAATCTAGTTGGGATGGAACCCCGTGTCAAAGAATTGGAAAAGTGTCTAGCATTGGAGTCGGAGTCGGTTAGTGAAATTCGAGTTGTCGGAATTAGTGGAATGGGGGGAATAGGAAAAACGACTCTTGCCATTGCTTTATACAAAAAGATTGCTCATCAATATGATGTTCATTGTTTTGTTGATGTTGAGAACAGTTATAGAGGACAATCCAGTTCACTAGGTGTACAAAAAGATTTACTTGAACAGTGTTTAAATGGCGAAAATCTACAGATTTGGGGTGTTTTTAGGGGAACATATATGTCATCATCTAGACTACACAATAAACGAGGACTTATAGTTCTTGATAATGTTAGTCAGGATGAACAACTATGTATGTTTACACTATTACTTGAATGTCTTGGTGAAAGGAGCACAATCATCATAATTTCTAGGAATGAACACATCTTAAGGACACTTGGAGTACATCATGTTTACCAAGTCCAACCATTGAACGAAGACAATGCTATTCATTTATTTTTCAAAAATGCTTATGGCAAAAATGCTTTCACATGTGACCATATTCTCACTACGTGGCGTACAGTTTTGGCACGTGAAATAGTATCATATGTTCAAGGCCATCCCTTAGCAATTGAAGTAGTAGGCAAATCTTTGGTAGGTGGAGATCTTGTGCAGGGTATAGTTACATTAAGTAAGCTAAGTAAAAATAAAAGTAAGAATATCATGGATGTGTTGCGAATAATTTATGATGATCTGGAAGAAAAAGACAAGGCAATATTTTTACATATTGCTTGCTTCTTCGGTCAGAATTATTCTGAGCATTATGTGAAGGAAATCCTAGGATTTCGTGGATTTAATCCTGAAATTGATCACCTCCAAATTCTTGTTGATAAATCACTCATAACCATTAGTGGTGGGATGATTTTTATGCCTAGCTTGCTGAGAGATTTAGGCAAATGTATTAGAGAAAAATCACCTAAAGAGCCAAGAAGGTGGAGTAGATTTAGGGATTGGAAAGTTGATGCTATATCAAAATTGAAAAACCTTGACTTGCTTATGCAAGAGAAGTTTGACAAGGTGGAGAAGGAGTTTGACTTATACGTGGATCGTTCTTGGAGTAACATCAAAGATTCATTGAACAACTTATGGGACAACTTGTAA 2256 0.4122 MSNPDRVHEANFACGEGLFEEQGTGVSEEGSDISAESEGGIVLVVERRDGRRSNAKHVAGVVGVTEDAKGGLVNGDHGAKGLDEAAALDFDKVSHYLLLGDGVVEGPPELTGLLEDNVEPRVLHVLRDGLAPELSLSIKQIGKIKKEAFLSTIISFIIFLHCPQLLSSQYASAIAMASSSSHAIITKYDVFVSFRGEDTRNNFSAFLFEALFENGIHAFKDDTHLQKGESIAPELLQAIQGSRLFLVVFSKNYASSTWCLRELAHICNCTIKASLSRVLPIFYDVDPSEVRKQSGYYGIAFAEHERRFRGDKEKMEEVQRWREALTQVTNLSGWDIRHRSQPAMIKEIVQKIKNILGPKFQNLPNDNLVGMEPRVKELEKCLALESESVSEIRVVGISGMGGIGKTTLAIALYKKIAHQYDVHCFVDVENSYRGQSSSLGVQKDLLEQCLNGENLQIWGVFRGTYMSSSRLHNKRGLIVLDNVSQDEQLCMFTLLLECLGERSTIIIISRNEHILRTLGVHHVYQVQPLNEDNAIHLFFKNAYGKNAFTCDHILTTWRTVLAREIVSYVQGHPLAIEVVGKSLVGGDLVQGIVTLSKLSKNKSKNIMDVLRIIYDDLEEKDKAIFLHIACFFGQNYSEHYVKEILGFRGFNPEIDHLQILVDKSLITISGGMIFMPSLLRDLGKCIREKSPKEPRRWSRFRDWKVDAISKLKNLDLLMQEKFDKVEKEFDLYVDRSWSNIKDSLNNLWDNL* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2225 751 Pfam NB-ARC domain 390 594 IPR002182 GO:0043531
Gso6g2225 751 Pfam TIR domain 187 365 IPR000157 GO:0007165
Gso6g2225 751 SMART till_3 187 331 IPR000157 GO:0007165
Gso6g2225 751 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 190 709 IPR044974 GO:0006952
Gso6g2225 751 ProSiteProfiles TIR domain profile. 186 356 IPR000157 GO:0007165
Gso6g2225 751 SUPERFAMILY "Winged helix" DNA-binding domain 605 689 IPR036390 -
Gso6g2225 751 Gene3D - 360 522 IPR027417 -
Gso6g2225 751 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 190 709 - -
Gso6g2225 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 628 IPR027417 -
Gso6g2225 751 Gene3D - 185 359 IPR035897 -
Gso6g2225 751 Gene3D - 528 618 IPR042197 -
Gso6g2225 751 SUPERFAMILY Toll/Interleukin receptor TIR domain 185 334 IPR035897 -
Gso6g2225 751 PRINTS Disease resistance protein signature 394 409 - -
Gso6g2225 751 PRINTS Disease resistance protein signature 470 484 - -
Gso6g2225 751 PRINTS Disease resistance protein signature 569 583 - -
Gso6g2225 751 PRINTS Disease resistance protein signature 706 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2225 Gso-Chr6 43059481 43072638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2225 369 711 WRKY Transcription Factor Family AT5G45050 33.333 4.65e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2225 - - gmx:106799107 753.436