Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2223 ATGAAGTTTGATTCTATATTCCAACAGACCAACCTACATTCCGGCATAATAATACTAAACATTTTTCTTCTAATGGCTGAAACATGTTCCGGTGCATCCAGATACGATGTGTTCATTAACTTCAGAGGGGAAGACACACGTTATGAATTTACTGGGCATCTCCACCAAGCTCTTTGTAAGAAGGGAATCCGTGCTTTCTTTGATGAAGAGGACCTTCAGACAGGAGACGAAATAACAACAAAACTTGAGGAGGCAATTAAAGGGTCGAGGATTGCCATCACTGTGTTCTCTAAAGGTTATGCTTCTTCCTCATTTTGCTTAAATGAACTTGCAACCATCCTTGGCTGCTACCGCGAGAAAACTCCACTGTTGGTTATTCCTGTCTTTTATAAGGTGGATCCTTCTGATGTAAGACACCAGCGAGGAAGTTATGAACAAGGATTGGATAGTCCTGAGAAAAGGTTACATCCTAACATGGAGAAATGGAGGACGGCTCTGCACGAAGTAGCAGGATTTTCTGGGCATCATTTCACAGATGGAGCTGGATATGAATACAAGTTTATTGGGAAGATTGTTGATGATGTCTTCCGCAAGATTAATGAAGCTGAAGCAAGTATATATGTTGCGGATCGCCCGGTTGGATTAGACTCACTAGTGCTAGAAATAAGGGAACGTTTGGAGGCTGAATCTAGTGATGCTATCTCCATGATAGGGATCCACGGAATGGGCGGGGTAGGAAAATCAACACTTGCTCGACAAGTTTATAATTTGCATACTAATCAATTTGATTATTCGTGTTTCCTACAAAACGTGAGAGAAGAATCAAACAGACACGGGTTAAAACGCCTACAAAGCATCCTTCTTTCACAAATACTTAAGCAGGGCATCAACTTAGCAAGTGAGCAACAAGGAACTTCGATGATAAAAAAACAGCTCAGAGGAAAGAAGGTTCTCTTAGTTCTAGATGATGTTGATGAGCACAAGCAATTACAGGCATTTGTTGGAAAATCTGTTTGGCCTGAGTCTGAGTCTGAGTCTAAGTCTGGCACCAGATTGGTTCTGATCATCACCACTCGGGACAAACAACTCCTAACATCTTATGGGTTCAAAAGAACATATGAGGTGAAAAATTTGAGTACAAACGATGCTATCCAATTGCTTAAACAGAAAGCTTTTAAAACATATGATGAAGTTGATCAAAATTACAAGCAGGTCTTGAATGATGTAGTAACTTGGACTTCTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCAAACCTGTTTGGAAAAAGTACTAAAGAATGGGAATCAGCTATCAAACAATATCAAAGAATTCCCAATAAGGAAATCTTGAAGATACTTCAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAAAAAAGTGTTTTTCTTGACATTACTTGTTGCTTGAAAGACTATAAATGCAGAGAGATTGAAGATATACTTCACAGTCTCTATGATAACTGCATGAAATACCATATTGGGGTGCTTCTTGACAAGTCTCTCATTAAGATTAGAGATGATAAAGTTACATTGCATGACTTGATTGAGAACATGGGTAAAGAGATTGACAGGCAGAAATCACCGAAAGAGGCAGGCAAGCGGAGGAGATTATGGTTACAGAAAGATATAATTCAAGTTTTAAAAGACAACTCGGGGACCAGTGAAGTTAAAATCATTTGTCTGGATTTCCCCATATCTGACAAACAAAAAACAATAGAATGGGATGGAAATGCCTTAAAGGAGATGAAAAACCTTAAAGCACTTATTATCAGAAACGGTATTTTATCCCAAGCTCCCAATTATCTACCAGAAAGTTTGAGGATATTAGAATGGCACACACATCCTTTCCATTGTCCACCGCCTGATTTTGATACAACGAAGCTTGCTATACGCGACTTGGAATAG 1926 0.3925 MKFDSIFQQTNLHSGIIILNIFLLMAETCSGASRYDVFINFRGEDTRYEFTGHLHQALCKKGIRAFFDEEDLQTGDEITTKLEEAIKGSRIAITVFSKGYASSSFCLNELATILGCYREKTPLLVIPVFYKVDPSDVRHQRGSYEQGLDSPEKRLHPNMEKWRTALHEVAGFSGHHFTDGAGYEYKFIGKIVDDVFRKINEAEASIYVADRPVGLDSLVLEIRERLEAESSDAISMIGIHGMGGVGKSTLARQVYNLHTNQFDYSCFLQNVREESNRHGLKRLQSILLSQILKQGINLASEQQGTSMIKKQLRGKKVLLVLDDVDEHKQLQAFVGKSVWPESESESKSGTRLVLIITTRDKQLLTSYGFKRTYEVKNLSTNDAIQLLKQKAFKTYDEVDQNYKQVLNDVVTWTSGLPLALEVIGSNLFGKSTKEWESAIKQYQRIPNKEILKILQVSFDALEEEEKSVFLDITCCLKDYKCREIEDILHSLYDNCMKYHIGVLLDKSLIKIRDDKVTLHDLIENMGKEIDRQKSPKEAGKRRRLWLQKDIIQVLKDNSGTSEVKIICLDFPISDKQKTIEWDGNALKEMKNLKALIIRNGILSQAPNYLPESLRILEWHTHPFHCPPPDFDTTKLAIRDLE* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2223 641 Pfam TIR domain 35 206 IPR000157 GO:0007165
Gso6g2223 641 SUPERFAMILY "Winged helix" DNA-binding domain 448 555 IPR036390 -
Gso6g2223 641 Gene3D - 377 462 IPR042197 -
Gso6g2223 641 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 174 IPR035897 -
Gso6g2223 641 SMART till_3 34 172 IPR000157 GO:0007165
Gso6g2223 641 ProSiteProfiles TIR domain profile. 33 199 IPR000157 GO:0007165
Gso6g2223 641 PRINTS Disease resistance protein signature 236 251 - -
Gso6g2223 641 PRINTS Disease resistance protein signature 311 325 - -
Gso6g2223 641 PRINTS Disease resistance protein signature 413 427 - -
Gso6g2223 641 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 640 IPR044974 GO:0006952
Gso6g2223 641 Pfam NB-ARC domain 219 455 IPR002182 GO:0043531
Gso6g2223 641 Gene3D - 29 203 IPR035897 -
Gso6g2223 641 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 37 640 - -
Gso6g2223 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 472 IPR027417 -
Gso6g2223 641 Gene3D - 204 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2223 Gso-Chr6 43023786 43026540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2223 30 635 WRKY Transcription Factor Family AT4G12020 27.010 6.69e-50 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2223 - - gmx:100790804 1244.95