Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2219 ATGGCTGCGACAACACGTTCCCTTGCATCCTACGATGTGTTCCTCAGCTTCAGTGGTTTAGACGCACTCTATGGTTTCACTGGCAACCTCTACAATGCTCTTTATGACAGGGGAATCTACACTTTCATTGATGATCAGGAGCGTTCGAGAGGAGACGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTGAAAACTATGCTTTTTCCTCATTTCGTTTAAATGAACTTGTAACCATCCTTGACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTACAACGTAGATCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGACTTACCATCAGAAGTTCAAAGCTAACAAGGAGAAGCTGCAGAAATGGAGGATGGCTTTGCATCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGATGGAGATTCATATGAATACAAGTTTATTGGGAGTATTGTTGATGAGGTCTCTAGGAAGATTAGTCGTCCTTCTTTAGTTGGTCTAGAGTCACAAGTGACAGAGGTAATGAAGCTTTTGGATGTTGGATCCCATGATGTTGTCCACATCATAGGGATCCATGGAATGGGCGGGTCAGGAAAAACAACACTTGCTCGGGAAGTTTATAATTTGATTGCTCTCCATTTTGATGAATCCTGTTTTCTTCAAAACGTTAGAGAAGAATCAAATAAACACGGGTTAAGACACCTTCAAAGCATCCTTCTTTTAGAATTACTTGGTGAGAAGAACATCACCTTAACAAGTTGGAGAGAAGGAGCTTCAATGATACGACATAGGCTCCGACAAAAGAAGGTTCTCTTGATTTTAGACGATGTTGACAAGCACAAACAATTAAGGGCTATGGTTGGAAGATCTGGTTGGTTTGGTGCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTACTAAAATATCATGGCGTTGAAAGAACTTATGAGGTGGAGGTTTTGAATCACAATACCGCTCTTCAATTGCTTACTTGGAATGCTTTTAAAAGAGAAAAAATTGATCCAAGTTATGAGGACGTGGAATCTGCTCTTGAACATTATAAGAGAAGTCCCGGTAATGAAATCATCCTAGAGATTCTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGCTTTGAAACATGTGCCATCATCATCTTCCTTCACCAATGATGTGTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACAGTTTCACTGGCAATCTCTGCAGAGCCCTTCATGACAGTGGAATTCACACCTTCGTTGATGACGAGGAGCTCCAGAGAGGGGACGAAATAACGTCAGAACTTGAGAAGGAAATTGAAGACTCCAGATTTTTCATCATTGTTCTCTCTCAGAACTATGCATCTTCCTCATTTTGCTTAAACGTACTTGCTTACATCCTTGAGTGCGTTAAGAGAAAACGTTTGTTGGTTTTGCCAATTTTTTACAAGGTGGATCCTTCTAATATTGGATACCATAGAGGTAGTTTTGGAGAAGCATTGGCTAATCATGAAATGAAGTTCAAAGCTAAAATGGATGGGTTAGAGCATAACATGGAGAAACTGGAGAAATGGAAGATGGCTCTGCATGAAACAGCTAACTTCTCAGGCTATCATTTTAAACAAGGGGATGGATACGAATACGAGTTTATTACCAGGATAGTTAAATTGGTCTCTAGCAAGATTGAACAGGATCCTTTCCATGTTGGGGATTATCCAGTTGGACTAGAGTCATATTCAGACGCATTCAACTATGATGTGTTCCTCAGCTTCAGAGGCTCAGACACACTCCATGGTTTTACTGGCTATCTCTACGAAGCTCTTCATGACAGTGGAATCCACACTTTCATTGATGAAGATCTTAAGAGAGGAGAAGAAATAACACCGGAAATTGTGAAGGCAATTGAAGAGTCCAGGATTGCCATCATTGTGCTCTCTATAAACTATGCTTCTTCCTCCTCTTGTTTAGACGAACTTGCAACCATCCTTGACTGCCTTAAGAGAAAAAGACTGTTGGTTTTACCAGTCTTTTATAATGTGGATCATTCTCAGGTGCGACTGCAGGAAGGTAGTTATGGAGAAGCCTTGGTGAAACATGAGGAGAGTTTAAAGCATAGCATGGAGAAGTTGGAGAAATGGAAGATGGCTCTGCATCAAGTAGCTAACTTGTCTGACATTAAAATCAAACATGGAGCTCGATATGAATACGACTTTATTGGGGAGATAGTTGAGTGGGTCTCCAGTAAGATTAATCCTGCTCATTACCCGGTTGGATTACGGTCAAAAGTGCTGGAAGTTAGGAAACTTTTGGATGTTGGACGTGATGATGGTGTCCACATGTTAGGGATCCATGGAATTGATGGTGTAGGGAAATCAACACTTGCACGAGAAGTTTATAATAAACTGATTTCTGACCATTTTGATGCTTCCTGTTTTATTGAAAACGTGAGAGAAAAATCTAAAAAACATGGGTTACATCACCTCCAAAACATCCTTCTTTCGAAAATACTTGGAGAGAAGGACATCAACCTCACAAGTGCCCAACAAGTGATTTCAATGATGCAACGGCATAGGCTCCAGCAAAAGAAGGTTCTCATGGTTCTAGATGATGTTGACAGGCCTGAGCAATTGCAAGCAGTTACTGGAAAACCTGCTTGGTTTGGTCCTGGCAGCAAAGTCATAATTACAACACAAGACAAACAACTGTTAACATCTTATGACATTAATAGAACATATGAGGTGAAGAAATTGAATAAGGATGATGCTCTTCAATTACTTAAATGGAAAGCTTTTAAGATGCATTACTTCGATCCAAGGTATGAGGAGCTCTTAAATCATGCAGTAACTTATGCTTCTAGTCTTCCATTGACTTTGGAAATATTAGCTTCCAACCTATTTGGAAAAAGTGTAAAAGAATGGAAATCTACTTTCCACCAATTTGAAAGAAGTCCGAATAATCCAATCGAAATGATACTTATAGTAATTTTTGATTCTTTGAAGGAAAAAGAAAAGAGTGTTCTTCTTGACATTGCTTGTTGCTTCAAAGGATATGAATTGACAGAGGTTCAAGATATACTTCATGCTCATTATGGTCAATGCATAAAGTATTATATTGACGTTTTGGTTGACAAATCTCTAGTATACATTAGTCATGGTACAGAGCCTTGTAATGATACAATTACAATGCATGACTTGATTGCTGAAGAGATTGTCCGACAGGAATCAATGACAAAGCCAGGTGAGCGCAGGAGATTATGGTCATTGGAAGATGTAAGGGAAGTTTTAGGATACAACAAGGCAACTAGCAAAATTGAAATCATATGTCTGGATTACCCCATATTTGATGAAGAAGAAATAGTACAATGGGATGGAACAGCTTTCCAAAATATGCAAAACCTCAAAACACTTATTATTAGAAATGGTAATTTTTCCAAAGGTCCGGAATATCTTCCAAATAGTTTGAGAGTATTTGAATGGTGGGGATATCCGTCACATTGTTTACCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTCATATTTCTACAACTGAGTTGACCAACTTATTGACGAAGTTCGTGAATGTGAAACTTTTGAAATTTTCAAGCGAAAAGGTAAGCTTAAAATATTGA 3702 0.3928 MAATTRSLASYDVFLSFSGLDALYGFTGNLYNALYDRGIYTFIDDQERSRGDALSKAIQESRIAITVLSENYAFSSFRLNELVTILDCKSEGLLVIPVFYNVDPSDVRHQKGSYGEAMTYHQKFKANKEKLQKWRMALHQVADLSGYHFKDGDSYEYKFIGSIVDEVSRKISRPSLVGLESQVTEVMKLLDVGSHDVVHIIGIHGMGGSGKTTLAREVYNLIALHFDESCFLQNVREESNKHGLRHLQSILLLELLGEKNITLTSWREGASMIRHRLRQKKVLLILDDVDKHKQLRAMVGRSGWFGAGSRVIITTRDKHLLKYHGVERTYEVEVLNHNTALQLLTWNAFKREKIDPSYEDVESALEHYKRSPGNEIILEILKVSFDALGEEQKNALKHVPSSSSFTNDVFLSFRGEDTRYSFTGNLCRALHDSGIHTFVDDEELQRGDEITSELEKEIEDSRFFIIVLSQNYASSSFCLNVLAYILECVKRKRLLVLPIFYKVDPSNIGYHRGSFGEALANHEMKFKAKMDGLEHNMEKLEKWKMALHETANFSGYHFKQGDGYEYEFITRIVKLVSSKIEQDPFHVGDYPVGLESYSDAFNYDVFLSFRGSDTLHGFTGYLYEALHDSGIHTFIDEDLKRGEEITPEIVKAIEESRIAIIVLSINYASSSSCLDELATILDCLKRKRLLVLPVFYNVDHSQVRLQEGSYGEALVKHEESLKHSMEKLEKWKMALHQVANLSDIKIKHGARYEYDFIGEIVEWVSSKINPAHYPVGLRSKVLEVRKLLDVGRDDGVHMLGIHGIDGVGKSTLAREVYNKLISDHFDASCFIENVREKSKKHGLHHLQNILLSKILGEKDINLTSAQQVISMMQRHRLQQKKVLMVLDDVDRPEQLQAVTGKPAWFGPGSKVIITTQDKQLLTSYDINRTYEVKKLNKDDALQLLKWKAFKMHYFDPRYEELLNHAVTYASSLPLTLEILASNLFGKSVKEWKSTFHQFERSPNNPIEMILIVIFDSLKEKEKSVLLDIACCFKGYELTEVQDILHAHYGQCIKYYIDVLVDKSLVYISHGTEPCNDTITMHDLIAEEIVRQESMTKPGERRRLWSLEDVREVLGYNKATSKIEIICLDYPIFDEEEIVQWDGTAFQNMQNLKTLIIRNGNFSKGPEYLPNSLRVFEWWGYPSHCLPSDFHPKELAICKLPCSHISTTELTNLLTKFVNVKLLKFSSEKVSLKY* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2219 1233 PRINTS Disease resistance protein signature 798 813 - -
Gso6g2219 1233 PRINTS Disease resistance protein signature 876 890 - -
Gso6g2219 1233 PRINTS Disease resistance protein signature 969 983 - -
Gso6g2219 1233 PRINTS Disease resistance protein signature 1146 1162 - -
Gso6g2219 1233 Gene3D - 401 588 IPR035897 -
Gso6g2219 1233 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 147 IPR035897 -
Gso6g2219 1233 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 409 596 - -
Gso6g2219 1233 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 358 - -
Gso6g2219 1233 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 606 1221 - -
Gso6g2219 1233 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 362 395 - -
Gso6g2219 1233 Gene3D - 766 928 IPR027417 -
Gso6g2219 1233 Gene3D - 170 328 IPR027417 -
Gso6g2219 1233 Pfam NB-ARC domain 783 1009 IPR002182 GO:0043531
Gso6g2219 1233 Pfam NB-ARC domain 180 361 IPR002182 GO:0043531
Gso6g2219 1233 SUPERFAMILY "Winged helix" DNA-binding domain 1006 1113 IPR036390 -
Gso6g2219 1233 ProSiteProfiles TIR domain profile. 405 580 IPR000157 GO:0007165
Gso6g2219 1233 ProSiteProfiles TIR domain profile. 9 171 IPR000157 GO:0007165
Gso6g2219 1233 SUPERFAMILY Toll/Interleukin receptor TIR domain 401 556 IPR035897 -
Gso6g2219 1233 SMART AAA_5 795 939 IPR003593 -
Gso6g2219 1233 SMART AAA_5 197 335 IPR003593 -
Gso6g2219 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 396 IPR027417 -
Gso6g2219 1233 Gene3D - 600 765 IPR035897 -
Gso6g2219 1233 Gene3D - 5 169 IPR035897 -
Gso6g2219 1233 Pfam TIR domain 408 579 IPR000157 GO:0007165
Gso6g2219 1233 Pfam TIR domain 11 170 IPR000157 GO:0007165
Gso6g2219 1233 Pfam TIR domain 602 768 IPR000157 GO:0007165
Gso6g2219 1233 ProSiteProfiles TIR domain profile. 601 768 IPR000157 GO:0007165
Gso6g2219 1233 SUPERFAMILY Toll/Interleukin receptor TIR domain 596 743 IPR035897 -
Gso6g2219 1233 SMART till_3 406 553 IPR000157 GO:0007165
Gso6g2219 1233 SMART till_3 602 741 IPR000157 GO:0007165
Gso6g2219 1233 SMART till_3 10 144 IPR000157 GO:0007165
Gso6g2219 1233 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 362 395 IPR044974 GO:0006952
Gso6g2219 1233 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 358 IPR044974 GO:0006952
Gso6g2219 1233 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 606 1221 IPR044974 GO:0006952
Gso6g2219 1233 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 409 596 IPR044974 GO:0006952
Gso6g2219 1233 Gene3D - 934 1018 IPR042197 -
Gso6g2219 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 1028 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2219 Gso-Chr6 42866483 42871966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2219 11 381 WRKY Transcription Factor Family AT4G12020 28.158 3.65e-30 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2219 - - gsj:114417037 2429.05