Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2218 ATGAAGTTTGGTTCTATATTCCAACAGACCAACCTACATTCCAGCATAATAATACTAAACTTTTTTCTTCGAATGGCTAAAACATGTTCCGGTGCATCCAGATACGATGTGTTCATTAACTTCAGAGGGGAAGACACACGTTTTGCATTTACCGGGCATCTCCACAAAGCTCTTTGTAACAAGGGAATCCGTGCTTTCATGGATGAAAATGACATTAAGAGAGGAGACGAAATAAGAGCAACACTTGAGGAGGCAATTAAAGGGTCGAGGATTGCCATCACTGTGTTCTCTAAAGACTATGCTTCTTCCTCATTTTGCTTAGATGAACTTGCAACCATCCTTGGCTGCTACCGCGAGAAAACTCTGTTGGTTATTCCTGTCTTTTATAAGGTGGATCCTTCTGATGTAAGACGCCTGCAAGGAAGTTATGCAGAAGGATTGGCTAGGCTTGAGGAAAGGTTCCATCCTAACATGGAGAATTGGAAGAAGGCTCTGCAGAAAGTAGCAGAATTGGCTGGGCATCATTTCAAAGATGGAGCTGGATATGAATTCAAGTTTATTAGGAAGATTGTTGATGATGTCTTCGACAAGATTAATAAAGCTGAAGCAAGTATATATGTTGCGGATCACCCGGTTGGATTACACTTAGAAGTGGAAAAAATAAGGAAACTTTTGGAGGCTGGATCTAGTGATGCTATCTCCATGATAGGGATCCACGGAATGGGCGGGGTAGGAAAATCAACACTTGCTCGAGCAGTTTATAATTTGCATACTGATCATTTTGATGATTCGTGTTTCCTACAAAACGTGAGAGAAGAATCAAACAGACACGGGTTAAAACGCCTACAAAGCATCCTTCTTTCACAAATACTTAAGAAGGAAATCAACTTAGCAAGTGAGCAACAAGGCACTTCGATGATAAAAAATAAACTCAAGGGAAAGAAGGTTCTCTTAGTTCTAGATGATGTTGATGAGCACAAGCAATTACAGGCAATTGTTGGAAAATCTGTTTGGTCTGAGTCTGAGTTTGGCACCAGATTGGTTCTGATCATCACCACTCGGGACAAACAACTCCTAACATCTTATGGGGTCAAAAGAACACATGAGGTGAAAGAATTGAGTAAGAAAGATGCTATTCAATTGCTTAAACGGAAAGCTTTTAAAACATATGATGAAGTTGATCAAAGTTACAATCAGGTCTTGAATGATGTAGTAACTTGGACTTCTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCGAACCTGTTTGGAAAAAGTATTAAAGAATGGGAATCAGCTATCAAACAATATCAAAGAATTCCCAATAAGGAAATCTTGAAGATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAAAAAAGTGTTTTTCTTGACATTACTTGTTGCTTGAAAGGCTATAAATGCAGAGAGATTGAAGATATACTTCACAGTCTTTATGATAACTGCATGAAATACCATATTGGGGTGCTTGTTGACAAGTCTCTCATACAGATTAGTGACGATAGAGTTACATTGCATGACTTGATTGAGAACATGGGTAAAGAAATTGACAGACAGAAATCACCTAAAGAGACAGGGAAGCGGAGGAGATTATGGTTACTAAAAGATATAATTCAAGTCTTAAAAGACAACTCGGGGACCAGTGAAGTTAAAATCATTTGTCTTGATTTCCCCATATCTGACAAACAAGAAACAATAGAATGGAATGGAAATGCCTTCAAGGAGATGAAAAACCTTAAAGCACTTATTATCAGAAACGGTATTTTATCCCAAGGTCCCAATTATCTACCAGAAAGTTTGAGAATATTGGAATGGCACAGACATCCTTCCCATTGTTTACCGTCTGATTTTGATACAACGAATCTTGCCATACGCGACTTGGAATAG 1911 0.3867 MKFGSIFQQTNLHSSIIILNFFLRMAKTCSGASRYDVFINFRGEDTRFAFTGHLHKALCNKGIRAFMDENDIKRGDEIRATLEEAIKGSRIAITVFSKDYASSSFCLDELATILGCYREKTLLVIPVFYKVDPSDVRRLQGSYAEGLARLEERFHPNMENWKKALQKVAELAGHHFKDGAGYEFKFIRKIVDDVFDKINKAEASIYVADHPVGLHLEVEKIRKLLEAGSSDAISMIGIHGMGGVGKSTLARAVYNLHTDHFDDSCFLQNVREESNRHGLKRLQSILLSQILKKEINLASEQQGTSMIKNKLKGKKVLLVLDDVDEHKQLQAIVGKSVWSESEFGTRLVLIITTRDKQLLTSYGVKRTHEVKELSKKDAIQLLKRKAFKTYDEVDQSYNQVLNDVVTWTSGLPLALEVIGSNLFGKSIKEWESAIKQYQRIPNKEILKILKVSFDALEEEEKSVFLDITCCLKGYKCREIEDILHSLYDNCMKYHIGVLVDKSLIQISDDRVTLHDLIENMGKEIDRQKSPKETGKRRRLWLLKDIIQVLKDNSGTSEVKIICLDFPISDKQETIEWNGNAFKEMKNLKALIIRNGILSQGPNYLPESLRILEWHRHPSHCLPSDFDTTNLAIRDLE* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2218 636 PRINTS Disease resistance protein signature 235 250 - -
Gso6g2218 636 PRINTS Disease resistance protein signature 310 324 - -
Gso6g2218 636 PRINTS Disease resistance protein signature 408 422 - -
Gso6g2218 636 SUPERFAMILY "Winged helix" DNA-binding domain 443 550 IPR036390 -
Gso6g2218 636 Pfam TIR domain 35 205 IPR000157 GO:0007165
Gso6g2218 636 Gene3D - 372 457 IPR042197 -
Gso6g2218 636 Gene3D - 29 203 IPR035897 -
Gso6g2218 636 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 37 635 - -
Gso6g2218 636 ProSiteProfiles TIR domain profile. 33 198 IPR000157 GO:0007165
Gso6g2218 636 Pfam NB-ARC domain 218 448 IPR002182 GO:0043531
Gso6g2218 636 SUPERFAMILY Toll/Interleukin receptor TIR domain 30 173 IPR035897 -
Gso6g2218 636 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 37 635 IPR044974 GO:0006952
Gso6g2218 636 Gene3D - 204 370 IPR027417 -
Gso6g2218 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 467 IPR027417 -
Gso6g2218 636 SMART till_3 34 171 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2218 Gso-Chr6 42860376 42863839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2218 30 630 WRKY Transcription Factor Family AT4G12020 27.391 4.26e-53 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2218 - - gmx:547638 1247.26