Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2214 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTTCCGGACGCCACCTTTGGCGTCAATTCCTCCGCCTTCACATGGCCCCCTAATGCCTTGAACGCTTCCTCCAATGTCGGCGTTGAAATTGATGGCTCGTTGGGGGATTCTGACAGTCTCAAAGAGTCTGGCTCAAAGAAAAGGGTTAGGTCTGAGTCATGTGCTGCTTCTGGCTCCAAGGCATGTCGGGAGAAGTTGAGAAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCGCCATTTTGGAGCCTGGAAGGCCTGCCAAAACAGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAGTTACGGGGTGAAGCCCAGAAGTTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAACGAACTTCGCGATGAGAAACAGAGGCTCAAGGCAGAGAAGGAGAAACTGGAGCAGCAGCTGAAATCTTTGAATGCACAGCCTAGTTTCATGCCTCCCCCTGCTGCAATGCCTGCTGCATTTGCGGCACAAGGCCAAGCCCATGGCAACAAGTTGGTACCTTTTATTAGTTATCCCGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTTCTCCGTCCACCAGTTGCCTAA 711 0.5007 MVSRENTNWLFDYGLIDDIPVPDATFGVNSSAFTWPPNALNASSNVGVEIDGSLGDSDSLKESGSKKRVRSESCAASGSKACREKLRRDRLNDKFVELGAILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSLNAQPSFMPPPAAMPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2214 236 CDD bHLH_AtILR3_like 80 155 - -
Gso6g2214 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 145 IPR036638 GO:0046983
Gso6g2214 236 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Gso6g2214 236 Coils Coil 123 178 - -
Gso6g2214 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Gso6g2214 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso6g2214 236 SMART finulus 81 132 IPR011598 GO:0046983
Gso6g2214 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
Gso6g2214 236 Gene3D - 63 124 IPR036638 GO:0046983
Gso6g2214 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2214 Gso-Chr6 42784664 42788864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2214 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.130 1.79e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g2214 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2214 - - gmx:100788858 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2214 6 42784664 42788864 Gso6g2214 6 42784664 42788864 ECH
Gso12g1130 12 16030030 16033854 Gso6g2214 6 42784664 42788864 GST
Gso12g1815 12 41865685 41868094 Gso6g2214 6 42784664 42788864 PCT
Gso11g3048 11 46330418 46332915 Gso6g2214 6 42784664 42788864 PCT
Gso6g2214 6 42784664 42788864 Gso12g1815 12 41865685 41868094 PCT
Gso6g2214 6 42784664 42788864 Gso11g3048 11 46330418 46332915 PCT