Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2210 ATGGAGAAAGAAGAGAAAAAGAAGATAAAGGGAAACGTTAAGGATAACATGCCAACAGTGTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCGGAGCCATCTGATGTACATGACCCCAAAACAAGGAAGCAGTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCTATAACTCATGAAGTGATTCTGAGCAATTCAAGGTGTGAGCTGAAGATAACTGGCTATGGAGGATTCCAAGAAGGAGGGGTTGGAAGTGGTGGTGGTGGTAGCAATGCTGGTGGAGGTTCAACTTTTGTGGGGACTTTGAGGCCTGGTACCCCTGGCCCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCTTTTAGGACTTCTTCCACTCCTCCAAGGAAATCTCCTTTCCTTTCATCAGATAAAGAAGGGTCTGGTCCTCATGGTGCTGGACTTCATTCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGCTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTCAACAAATGGGATGCTGCTGAAGCTCATCATTTATCCAAGCATGCTGTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCAGAAAACCAGTGTGGTAGAATTGAGAGAGTTTTGAAGGTTCACAACATGCAAAAGACTCTTGCAAGATTTGAGGAGTACAGGGAAATGGTGAAGATCAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTTGCCGATGGGAATGAACTTCTGAGGTTCTATGGCACCACTGTTTCATGCTCTCTTGGCCTCAATGGCTCTTCTAGTCTCTGCCTATCAGAAAAGTGTTGTGTTTGCAGAATCATAAGGAATGGTTTTTCAGCCAAGAAGGAGCTCAAGGGTGGAATTGGAGTCTTCACAACATCCACAAGTGGAAGGGCTTTTGAGTCCATAGATATCACTTGTGAGGAACCATCATTGAGAAAAGCACTTATAGTGTGCAGAGTAATTGCTGGCAGGGTTCATAGGCCACTTGAGAACATTCAAGAAATGGCAGCACAAACAGGATTTGACTCATTGGCTGGGAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1326 0.4449 MEKEEKKKIKGNVKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKQLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGGVGSGGGGSNAGGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSSDKEGSGPHGAGLHSSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVSCSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIDITCEEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2210 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 18 441 - -
Gso6g2210 441 MobiDBLite consensus disorder prediction 126 200 - -
Gso6g2210 441 PANTHER - 18 441 - -
Gso6g2210 441 MobiDBLite consensus disorder prediction 158 173 - -
Gso6g2210 441 SUPERFAMILY ADP-ribosylation 232 440 - -
Gso6g2210 441 Gene3D - 221 440 - -
Gso6g2210 441 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2210 Gso-Chr6 42697577 42700276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2210 17 441 C2H2 Transcription Factor Family AT5G54630 67.888 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g2210 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2210 - - gmx:100787790 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2210 6 42697577 42700276 Gso6g2210 6 42697577 42700276 ECH
Gso12g1136 12 16269713 16272387 Gso6g2210 6 42697577 42700276 GST