Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2208 ATGAAAGAGGAGTCAGTTGGACTAATTATTGGGGTTTCCATAGGTGTGGTTATTGGACTAGTTTTGGCAATTTTTGCATTCTTCTGCCACCGATACCATCGGAAGCGATCACAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATACCTATTCGCACAAATGGTGCTGATTCGTGCACCATTCTTTCAGACTCAACCTTAGGTCCAGAATCACCCATAAAGTCAGATAGACATGGCATGCCCTTTTGGCTTGATGGGTTTAAGAAGAGTAGTAGTAGCATGATCCCAGCATCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCAACACATAACTTCACCACAGTCATTGGAGAAGGCGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACCGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAGTGATGTGAATGAAGCACTGTCCTGGGATTTGAGGGTTCCCATAGCTTTAGATGTGGCAAGAGGCTTGGAATATCTTCATAATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCCGGAACATTCACTAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATAGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTTGAGCTTGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAGGAAATCGTGGATTCTCGCCTTCAAGGAAACTTTGATGTCAAGGAACTCAATGAAATGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCAAGTAAACGTCCTTCTATGAGGGACATAGTGCAAGTGTTAACAAGGATACTTAAATCAAGGAACCATGGGAGTCATCACAAAAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGACACTGATCAGCTAGAGAACAAGATTTCTGTTACTGACCACAGGAGAGAAGAGTCTTTGGATAGTGTAGCAGAGGTGTATGAAGTGTAG 1293 0.4292 MKEESVGLIIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATIPIRTNGADSCTILSDSTLGPESPIKSDRHGMPFWLDGFKKSSSSMIPASGLPEYAYKDLQKATHNFTTVIGEGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFNTEVMLLGRLHHRNLVNLVGYCAEKGKHMLVYVYMSNGSLASHLYSDVNEALSWDLRVPIALDVARGLEYLHNGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLQGNFDVKELNEMAALAYKCINRAPSKRPSMRDIVQVLTRILKSRNHGSHHKNSLSATDEVFIDTDQLENKISVTDHRREESLDSVAEVYEV* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2208 430 PANTHER OS01G0253100 PROTEIN 5 404 IPR045271 GO:0004714|GO:0006468
Gso6g2208 430 ProSiteProfiles Protein kinase domain profile. 114 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2208 430 SMART serkin_6 114 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2208 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Gso6g2208 430 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 404 - -
Gso6g2208 430 Pfam Protein tyrosine and serine/threonine kinase 116 376 IPR001245 GO:0004672|GO:0006468
Gso6g2208 430 SUPERFAMILY Protein kinase-like (PK-like) 89 376 IPR011009 -
Gso6g2208 430 Gene3D Phosphorylase Kinase; domain 1 86 189 - -
Gso6g2208 430 Gene3D Transferase(Phosphotransferase) domain 1 190 403 - -
Gso6g2208 430 CDD STKc_IRAK 120 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2208 Gso-Chr6 42672241 42677910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2208 104 404 Receptor kinase-like Gene Family AT2G28970 44.304 8.57e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gso6g2208 PK_Tyr_Ser-Thr 3.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2208 - - gmx:100786710 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2208 6 42672241 42677910 Gso6g2208 6 42672241 42677910 ECH
Gso12g1137 12 16336734 16353054 Gso6g2208 6 42672241 42677910 GST
Gso12g1826 12 41939927 41945116 Gso6g2208 6 42672241 42677910 PCT
Gso11g3037 11 46259902 46264654 Gso6g2208 6 42672241 42677910 PCT
Gso6g2208 6 42672241 42677910 Gso12g1826 12 41939927 41945116 PCT
Gso6g2208 6 42672241 42677910 Gso11g3037 11 46259902 46264654 PCT