Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2207 ATGGACTTGAATCAGTTTTCAAGTTTCAACGTGATTAGTTCAGCAGGATTCCCTTGCGCATCATCTTGTACTCCTATTTCACCAATATCCAACCGGTTGCTTGGATCCTTGAAACTTGATATAGGAAACTCACCTAATTCGGCCCTTTCTACTCATTTTGATTCTGATACTGTTTCTTCTGCATTAAGTGACAGCCAGGAGCAGCACAACTGCGGGGAAATTCACTCTGGTGTCAACTCCTGTAACTCTTTGCAGGAAAGCAATCATTATTTGCATAGGCCGGTCTCATCTGTAGACCATCTCGAAGACGGATTGCATCTATCTACTAGGAGCTTTTTTCCACAGGATGCAAGTTATGACCATGAAACCAGACATGCATTGCTGGAATTAGAAACTTCTTTGATGGCACCTGATGAAGAAGATCAAGTCACCACATCAAGCACTTCTTTGGGTGATAGCAGTAGGCCAACAGCATCTGACCAAAGAAATAGGTCTTGGAGCCATGAGGGCCAATCAAGTGATGTTGCATATGTAGAGAAGCGTCACAAATCAATGGAGGAAGCGTTGCTACAGGGATTCCCATCAAGCAATTTGAAACAATTGCTGATTGTATGCGCCAAAGCCTTGTCTGAAAACAACATGAAAGGTTTTGATCAGTTAATAGAGAAGGCTAGAAGTGCTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTGGGTGCTTATTTGGTAGAAGGGCTTGTTGCAAGGAAGGAGGCATCAGGAAATAACATCTACCATGCCCTAAGATGCAGAGAGCCTGAGGGAAAAGACTTACTCTCTTACATGCAGCTACTGTATGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAACGGCGCTATTGCTGAAGCATGTAGGAATGAGGACCTAATTCATATCATAGACTTTCAGATTGGTCAGGGAACTCAATGGATGACACTTCTTCAAGCACTTGCAGCAAGACCTGGTGGAGCTCCCCATGTGCGGATCACAGGGATTGACGATCAACTTTCTAAATATGTTCGGGGAGATGGATTGGAAGCCGTTGGGAAAAGGTTGGCTGCAATCTCTCAGACATTTAACATCCCAGTTGAGTTCCATGGCGTGCCTGTTTTAGCTCCAGATGTGACAAAAGACATGCTTGATGTTAGGCCTGGTGAGGCTTTGGCTGTGAACTTCCCTTTGCAACTCCATCATACAGCTGATGAAAGTGTTGATATGAGTAATCCAAGGGATGGACTTTTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACTTTGGTAGAGCAAGAATCGAACACAAATACCACTCCCTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAATGTTCGAGTCCATTGATGTGTCTCTTCCGAGAAAGAGCAAGGAGCGGGTTAATGTGGAGCAACATTGTTTGGCTCGGGATATTGTCAACATTATAGCTTGCGAAGGGAAAGAAAGGGTAGAGAGACATGAGCTGTTAGGAAAGTGGAAGTCGAGATTAACAATGGCTGGCTTTTGTCAATATCCTTTGAGTTCTTATGTGAATTCTGTCATAAGAAGCCTGCTGAGGTGCTATTCAGAACATTATAATCTTGTGGAGAAGGATGGGGCCATGCTTCTGGGATGGAAGGACAGAAATTTGATTTCAGCTTCAGCTTGGCATTGA 1707 0.4382 MDLNQFSSFNVISSAGFPCASSCTPISPISNRLLGSLKLDIGNSPNSALSTHFDSDTVSSALSDSQEQHNCGEIHSGVNSCNSLQESNHYLHRPVSSVDHLEDGLHLSTRSFFPQDASYDHETRHALLELETSLMAPDEEDQVTTSSTSLGDSSRPTASDQRNRSWSHEGQSSDVAYVEKRHKSMEEALLQGFPSSNLKQLLIVCAKALSENNMKGFDQLIEKARSAVSITGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPEGKDLLSYMQLLYEICPYLKFGYMAANGAIAEACRNEDLIHIIDFQIGQGTQWMTLLQALAARPGGAPHVRITGIDDQLSKYVRGDGLEAVGKRLAAISQTFNIPVEFHGVPVLAPDVTKDMLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAMFESIDVSLPRKSKERVNVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFCQYPLSSYVNSVIRSLLRCYSEHYNLVEKDGAMLLGWKDRNLISASAWH* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2207 568 Pfam GRAS domain family 198 567 IPR005202 -
Gso6g2207 568 ProSiteProfiles GRAS family profile. 189 568 IPR005202 -
Gso6g2207 568 MobiDBLite consensus disorder prediction 133 174 - -
Gso6g2207 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 568 IPR005202 -
Gso6g2207 568 MobiDBLite consensus disorder prediction 138 172 - -
Gso6g2207 568 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2207 Gso-Chr6 42655929 42659502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2207 121 567 GRAS Transcription Factor Family AT5G48150 57.589 3.52e-179 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso6g2207 GRAS 1.2e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2207 - - gmx:100775665 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2207 6 42655929 42659502 Gso6g2207 6 42655929 42659502 ECH
Gso12g1139 12 16442147 16445796 Gso6g2207 6 42655929 42659502 GST
Gso12g1827 12 41960674 41964088 Gso6g2207 6 42655929 42659502 PCT
Gso11g3036 11 46238820 46241668 Gso6g2207 6 42655929 42659502 PCT
Gso6g2207 6 42655929 42659502 Gso12g1827 12 41960674 41964088 PCT
Gso6g2207 6 42655929 42659502 Gso11g3036 11 46238820 46241668 PCT