Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2206 ATGTGTGTGTTCAGCATTCCGCATTTGGCTGTGTTGAGGCGTTTGGTTTCCTCAGATGCCTCATGTAAGATGAGGAAGAAAATCATAGGTCCCTCCTCTGAGAAGAAGTTTCGCGGCGTCCGACAACGACTGTGGGAGAAATGGGTGGCGGAGGTTCGGAATCTGGCAAGAAGAGTGCATCTCTGGTTGGGAACCTATGACACTGCCGAAGAAGCTGCTATGGTTTACTACGATGTCATAATTCGTCTTCATGGCCCTGACGCATTAACAAACTTCACGCCGCCGCAAAGAGATTCTCCGTCTCCATCTCCACTGCCGGCGGTGGCGGAGACTCTGGCGGAGGTTTGTGAAATGAAGGTGTTGGTCATCGAAGAAGCCTTTGGCTCCGGCTGCGATTCCAACGAGTATCATTGCTTTCCTAGCTCCACCTCACCGCTTCATATTTTCAGGTTATTGCTATATTAG 465 0.5032 MCVFSIPHLAVLRRLVSSDASCKMRKKIIGPSSEKKFRGVRQRLWEKWVAEVRNLARRVHLWLGTYDTAEEAAMVYYDVIIRLHGPDALTNFTPPQRDSPSPSPLPAVAETLAEVCEMKVLVIEEAFGSGCDSNEYHCFPSSTSPLHIFRLLLY* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2206 154 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Gso6g2206 154 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Gso6g2206 154 CDD AP2 35 92 IPR001471 GO:0003700|GO:0006355
Gso6g2206 154 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Gso6g2206 154 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 105 - -
Gso6g2206 154 Pfam AP2 domain 36 76 IPR001471 GO:0003700|GO:0006355
Gso6g2206 154 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Gso6g2206 154 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Gso6g2206 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 24 105 - -
Gso6g2206 154 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2206 Gso-Chr6 42654609 42655073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2206 32 93 AP2-EREBP Transcription Factor Family AT4G23750 69.355 1.68e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g2206 AP2 3.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2206 - - gsj:114416296 318.161