Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2205 ATGGCTTCTAAGGCCATCATCCAATACAGCTCTTCTTCTTCTTCATCTCATGCGATCATCACTACATATGATGTGTTTGTCAGCTTCCGCGGTGAAGACACGCGCAACAACTTCACTGCTTTTCTCTTTGATGCTCTCTTTGAAAATGGCATCCATGCCTTCAAAGATGATACACATCTTCAGAAAGGCGAATCCATAGCACCCGAGCTGCTACTGGCCATTCAAGAGTCTCGCCTTTTCCTTGTGGTCTTCTCTAAGAACTATGCTTCCTCAACTTGGTGCTTGCGTGAACTTGCACACATCTGCAACTGCACTATTGAAGCATCCCCGAGTCGTGTTCTTCCAATTTTCTATGATGTTGATCCATCAGAGCTGCGGAAACAGAGTGGTTATTATGGGATTGCCTTTGCAGAACACGAAGAAAGATTCAGAGAAGATAAAGTGAAGATGGAGGAACTGCAGAGATGTAGAGAAGCTCTGACACAAATGGCCAACCTCTCTGGCTGGGATATCCGAAATAAGTCACAACCTGCAATGATTAAAGAAATTGTTCAAAAAATAAATTATATATTGGGTCCCAAATTTCAAAATCTTCCAAGTGGTAATCTGGTTGGGATGGAATCCCGTGTTGAAGAATTAGAAAAGTGTTTAGCATTGGAGTCGGTCACTGACGTTCGAGTTGTCGGAATTAGTGGAATGGGGGGAATAGGAAAAACGACTCTTGCCCTTGCTTTATACGAAAAGATTGCTTATCAATATGATGTTCATTGTTTTGTTGATGATGTAAACAAAATTTATCGACATTCTGGTTCATTAGGTGTACAAAAACAATTACTTGATCAGTGTCTAAATGATAAAAATCTAGAGATTTGTAATGTTTCTAGGGGAACATATTTGATAGGGACTAGGCTACGCAATAAACGAGGACTTATAGTTCTTGATAATGTTAGTCAGGTTGAACAACTACACATGTTTACGGGGAGTAGAGAGACTCTATTACGTGAGTGCCTAGGTGGAGGGAGCAGGATCATCATAACTTCTAGGGATGAACACATATTAAGGACACATGGAGTAAATCATGTTTACAGAGTCAGGCCATTGAATCAAGACAATGCTGTTCAGTTATTTTGCAATAATGCTTTCAAATGTGACTATATTATGAGTGATTATAAAATGTTGACACATGATGCACTATGGCATGCTCAAGGCCATCCCTTGGCAATTAAAGTAATAGGCAAATCCTTGTTTGGTGTAGATGTTTCACAGTGGGAAGGTACATTGGTTAGGCTAAGTGAAAATAAAAGTAAGAATATTATGGACGTGTTACGAATAAGTTATGATGCTCTGGAAGAAAAAGACAAGGAAATATTTTTAGATATTGCTTGCTTTTCCGGTCAGCATTATTTTGAGGATAATGTGAAGGAAATCCTAAATTTTCGTGGATTTAATCCTGAATTTGGCCTCCAAATTCTTGTTGATAAATCACTCATAACCATTAGTTACGGGAAGATTTATATGCATGACTTGTTGAGAGATTTAGGCAAGTGTATTGTTAGAGAAAAATCACCTAAAGAGCCAAGAAAGTGGAGTAGACTATGGGATTGTGAAGATCTCTACAAATTTATGTCGAGCAATAAGGAAGCAAAAAATCTGGAAGCCATAGTTGTTGAAGATGAACCAGGGATGTTTTCTGAAACAACAATGAGATTTGATGCTCTATCAAAAATCAAAAACCTTAAGTTGCTTATACTTCCCAGGTATTATGAGAAGGGGCTTTCCACAATTGAGGAGGAGAAATTTTCAGGAAGCCTTAATTATCTTTCCAATGAATTAGGATATCTTATTTGGCATTTTTATCCCTTTAACTTTCTACCTAAGTGTTTTCAGCCACACAATCTTGTTGAGTTGAATCTTTCTGGGAGTAACATCCAACATTTATGGGACAGCACACAGCCTATACCCAATTTGAGACGTTTGAATGTCTCTGATTGTGATAATCTAATTGAGGTGCAAGATTTTGGTGAGGCCCTAAATCTCGAGAGACTAGATCTCAGTGGATGTGGACGACTCAGTCGGTTCCATCCATCCATTGGTTTTCCTAGAAATCTTACCTATTTGAATTTAAGTGACTGCAAAAGTCTTGTCGAGTTACCACATTTTGAACAGGCCCTAAATCTTGAAAAGTTAAATCTGGGAGGATGTGAACTACTAAAACAGCTACCCCATCCATTGGTCGTCTAA 2241 0.386 MASKAIIQYSSSSSSSHAIITTYDVFVSFRGEDTRNNFTAFLFDALFENGIHAFKDDTHLQKGESIAPELLLAIQESRLFLVVFSKNYASSTWCLRELAHICNCTIEASPSRVLPIFYDVDPSELRKQSGYYGIAFAEHEERFREDKVKMEELQRCREALTQMANLSGWDIRNKSQPAMIKEIVQKINYILGPKFQNLPSGNLVGMESRVEELEKCLALESVTDVRVVGISGMGGIGKTTLALALYEKIAYQYDVHCFVDDVNKIYRHSGSLGVQKQLLDQCLNDKNLEICNVSRGTYLIGTRLRNKRGLIVLDNVSQVEQLHMFTGSRETLLRECLGGGSRIIITSRDEHILRTHGVNHVYRVRPLNQDNAVQLFCNNAFKCDYIMSDYKMLTHDALWHAQGHPLAIKVIGKSLFGVDVSQWEGTLVRLSENKSKNIMDVLRISYDALEEKDKEIFLDIACFSGQHYFEDNVKEILNFRGFNPEFGLQILVDKSLITISYGKIYMHDLLRDLGKCIVREKSPKEPRKWSRLWDCEDLYKFMSSNKEAKNLEAIVVEDEPGMFSETTMRFDALSKIKNLKLLILPRYYEKGLSTIEEEKFSGSLNYLSNELGYLIWHFYPFNFLPKCFQPHNLVELNLSGSNIQHLWDSTQPIPNLRRLNVSDCDNLIEVQDFGEALNLERLDLSGCGRLSRFHPSIGFPRNLTYLNLSDCKSLVELPHFEQALNLEKLNLGGCELLKQLPHPLVV* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2205 746 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 713 IPR044974 GO:0006952
Gso6g2205 746 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 713 - -
Gso6g2205 746 Gene3D Ribonuclease Inhibitor 537 744 IPR032675 -
Gso6g2205 746 PRINTS Disease resistance protein signature 227 242 - -
Gso6g2205 746 PRINTS Disease resistance protein signature 303 317 - -
Gso6g2205 746 PRINTS Disease resistance protein signature 401 415 - -
Gso6g2205 746 PRINTS Disease resistance protein signature 674 690 - -
Gso6g2205 746 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 169 IPR035897 -
Gso6g2205 746 SUPERFAMILY L domain-like 571 741 - -
Gso6g2205 746 Pfam TIR domain 23 194 IPR000157 GO:0007165
Gso6g2205 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 460 IPR027417 -
Gso6g2205 746 Gene3D - 366 450 IPR042197 -
Gso6g2205 746 SUPERFAMILY "Winged helix" DNA-binding domain 437 541 IPR036390 -
Gso6g2205 746 SMART till_3 22 166 IPR000157 GO:0007165
Gso6g2205 746 Gene3D - 20 194 IPR035897 -
Gso6g2205 746 Pfam NB-ARC domain 207 442 IPR002182 GO:0043531
Gso6g2205 746 Gene3D - 195 360 IPR027417 -
Gso6g2205 746 ProSiteProfiles TIR domain profile. 21 191 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2205 Gso-Chr6 42619416 42622429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2205 204 745 WRKY Transcription Factor Family AT5G45050 34.650 3.36e-80 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2205 - - gmx:100820033 1437.94