Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2203 ATGCATCTCACTACCTCCGTCGCCGTCCTCGTCGGCTGCGTCGTTGTCTTCATCTGGCGGAGATCCTCCTCCCCCAAGGCCAAGAAGGTCACCTCGAATTCCGCTTCTGCAATTGCAATGGCTTCTAATGCGACCATCCCTACATATGATGTGTTTGTCAGCTTCCGCGGTGAAGACACGCGCAACAGCTTCACTGCTTTTCTCTTTGATGCTCTCTCTCAAAATGGCATCCATGCCTTCAAAGATGATACACATCTTCAGAAAGGCGAATCCATAGCACCCGAGCTGCTACTGGCCATTCAAGGGTCTGGCCTTTTCGTTGTGGTCTTCTCAAAGAACTATGCTTCCTCAACTTGGTGCTTGCGTGAACTTGCACACATCTGCAACTGCACTATTCAAGCATCCCCGAGTCGTGTTCTTCCAATTTTCTATGATGTTGATCCATCAGAGCTGCGGAAACAGAGTGGTTATTATGGGATTGCCTTTGCAGAACACGAACGAAGATTCAGAGGAGATAAAGAGAAGATGGAGGAACTGCAGAGATGGAGAGAAGCTCTGAAACAAGTGGCCAATATCTCTGGCTGGAATATCCAAAATGAGTCACAACCTGCAGTGATTGAAAAAATTGTTCTAGAAATAAAATGTAGATTGGGTTCCAAATTTCAAAATCTTCCAAAGGGTAATCTAGTTGGGATGGAATCCTGTGTTGAAGAATTAGAAAAGTGTTTAGAATTGGAGTTGGTTAGTGACGTTCGAGTTGTTGGAATTTGTGGAATGGGGGGAATAGGAAAAACCACTCTTGCACGTGCTTTATACGAAAAGATTTCTTATCAATATGATTTTCATTGTTTTGTTGATGATGTAAAAGAAATTTATAAAAAAATTGGTTCACTAGGTGTACAAAAACAATTGCTTTCTCAATGTGTAAATGATAAAAATATAGAGATTTGCAATGCTTCCAAGGGAACATATTTGATAGGAACTAGGTTACGCAATAAACGAGGACTTATAGTTCTTGATAATGTTAGCCGGGTTGAACAACTACACATGTTTACAGGGAGTAGAGAGACTCTATTACGTGAATGTGTAGGTGGAGGGAGTAGAATCATCGTAATTTCTAGGGATGAACACATATTAAGGACACATGGAGTAAATCATGTTTACCAAGTCAAGCCATTGAATCAAGACAATGCTGTTCAGTTATTTTGCAAAAATGCTTTCAAATGTGACTATATTTTGAGTGGTTACAAAATGTTGACACATGATGTATTATCACATGCTCAAGGCCATCCCTTGGCAATTCAAGTAATAGGCAACTTTTTGCAAGGTCGAAATGTTTCGCAGTGGAAAAGTACATTGGTTAGGTTAAATGAAATTAAAAGTGAGGATATTATGAAGGTGTTGCGAATAAGTTATGATGATCTGGAAGAAAAAGACAAAGAAATATTTTTAGATATTGCTTGTTTCTTCAGTCGTGATTATAGTTATAAATATTCTGAGCGTTATGTGAAAGAAATCCTGGATTTTCGTGGATTTAATCCTGAAATTGGCCTCCCAATTCTTGTTGATAAATCACTCATAACCATTAGTCACGGGAAGATTTATATGCATAGGTTGCTGAGAGATTTAGGCAAGTGTATTGTTCGAGAAAAATCACCTAAAGAGCCAAGAAATTGGAGTAGATTGTGGGATTGGAAAGATCTCTACGAAGTTTTGTCGAACAATATGAAAGCAAAAAATCTGGAAGCCATAGTTGTTGAAGATAAAACATGGATGTTTTTTGAAACAACAATGAGAGTTGATGCTCTATCAAAAATGAAAAACCTTAAGTTGCTTATGTTTCCCGAGTATAAGCAGTGGAAGGTTACCACAAATGAGAAGAAGAAATTTTCAGGAAATCTCAATTATGTTTCCAATAATAAATTAGGATATCTTATTTGGCCATACTATCCCTTTAACTTTCTACCTCAATGTTTTCAGCCACACAATCTTATTGAGTTGGATCTTTCTAGGAGTAACATCCAACATTTATGGGACAGCACACAGCCTATACCCAAACTGAGACGTTTGAATCTCTCTTTCTGCGTCAATCTAATTGAGGTGCCAGATTTTAGTGAGGCCCTAAATCTCGAGAGTCTAGATCTCAGTGGATGTACACGACTCAGTCGGTTCCATCCATCCATTGGTTTTCCTAGAAATCTTACCAATTTGAGATTATGGGACTGCAAAAGTCTTGTCGAGTTACCACATTTTGAACAGGCCCTAAATCTTGAATACTTAGATCTGACAGGATGTGAACAACTAAAACAGCTACCCTCATCCATTGGTCGTCTAAGAAAGCTTAAATTTTCATTAGATTTGGAAGAGTGTAAAAGTCTCACTGACTTGCCACATTTTGCAGAGGACCTAAATTTTTCCTGGTTAAATCTCAGAGGATGTATAGAACTAAGGCAGATACATCCATCCATTGGTCACCTAAGAAAGCTTTCTGGTTTAGTTTTGCAAAATTGCAAAAGTCTCGTAAAGTTGCCAGATTTTGCAGAGGACCTAAATCTTAGACAGTTAAATCTCGAAGGATGTGAACAACTAAGGCAGATACATCCATCCATTGGTCATCTAACAAAGCTTGAGGTTTTAAATTTGAAAGATTGCAAAAGTCTCGTAAAGTTGCCAGATTTTGCAGAGGACCTAAATCTTAGAGAGTTAAATCTCGAAGGATGTGAACAACTAAGGCAGATACATCCATCCATTGGTCATCTAACAAAGCTTGTTAAATTAAATTTGAAAGATTGCAAAAGTCTCGAAAGCTTACCCAACAACATATTGAGACTCAGTTCTCTCCAATACCTAAGTCTTTTCGGCTGTTCAAAACTATATAATATCCGTTCATCAGAAGAACAAAGGGGTGCAGGGCATTTGAAGAAGCTTCGTATAGGTGAAGCTCCCAGTCGTTCCCAATCAATATTCTCATTCTTCAAAAAGGGGCTTCCATGGCCTTCTGTGGCCTTCGACAAAAGCCTGGAGGATGCACACAAAGATTCAGTTAGATGTTTGTTGCCTTCCTTGCCTATTTTCCCATGTATGCGTGAACTTGATTTAAGTTTCTGCAATTTACTTAAAATCCCTGATGCTTTTGTTAATTTCCAATGCTTAGAAGAGCTATATTTAATGGGAAACAATTTTGAAACACTACCCAGCCTCAAGGAGCTTTCCAAACTGTTACATTTAAACTTACAACACTGCAAGAGATTGAAATATTTGCCTGAGCTCCCTTCACGAACTGATCTGTTTTGGTGGAATTGGACAACTGTTGATGATTATGAATATGGATTGGGATTAAATATTTTCAACTGCCCAGAATTAGCTGAGAGAGATCGCTGCCCCAACAATTGTTTCTCATGGATGATGCAAATAGCTCATCCCGATTTACTTCCTTTGGTTCCACCGATTTCAAGTATTATTCCAGGAAGTGAAATACCAAGCTGGTTCGAGAAACAGCATTTGGGCATGGGCAATGTCATAAACATAGGCAGATCTCACTTTATGCAGCATTACAAAAATTGGATAGGCCTTGCGTTGAGTGTAATCTTCGTGGTACACAAAGAAAGAAGAATTCCCCCTCCAGACATGGAACAACCTTCAATTCTTAGTATTACATGTGGCCCTTCTATTCCACCCCAACAAAGAAAGAAAGAACGTCCATCTCCTTATATTCCGGTTCTTTTCCGTGAAGATCTAGTCACTGATGAATCGGATCACTTGTGGCTATTCTATTTCACTCTAGATCTTTTTGATGATCGTAATTTTGATGAGTTGGAAGTGAAATGTAGATCCAGAGATCTTCTTCATGATCAAGATTTGGTTGTTGAAGTGAAGAAATATGGGTATCGTTGGGTACATAAACATGATCTAGAATTATTAAATAGGTCGTCTCTGAAGCGCAATTTTTCGGAAATTAAAGAAAACTAG 3969 0.3862 MHLTTSVAVLVGCVVVFIWRRSSSPKAKKVTSNSASAIAMASNATIPTYDVFVSFRGEDTRNSFTAFLFDALSQNGIHAFKDDTHLQKGESIAPELLLAIQGSGLFVVVFSKNYASSTWCLRELAHICNCTIQASPSRVLPIFYDVDPSELRKQSGYYGIAFAEHERRFRGDKEKMEELQRWREALKQVANISGWNIQNESQPAVIEKIVLEIKCRLGSKFQNLPKGNLVGMESCVEELEKCLELELVSDVRVVGICGMGGIGKTTLARALYEKISYQYDFHCFVDDVKEIYKKIGSLGVQKQLLSQCVNDKNIEICNASKGTYLIGTRLRNKRGLIVLDNVSRVEQLHMFTGSRETLLRECVGGGSRIIVISRDEHILRTHGVNHVYQVKPLNQDNAVQLFCKNAFKCDYILSGYKMLTHDVLSHAQGHPLAIQVIGNFLQGRNVSQWKSTLVRLNEIKSEDIMKVLRISYDDLEEKDKEIFLDIACFFSRDYSYKYSERYVKEILDFRGFNPEIGLPILVDKSLITISHGKIYMHRLLRDLGKCIVREKSPKEPRNWSRLWDWKDLYEVLSNNMKAKNLEAIVVEDKTWMFFETTMRVDALSKMKNLKLLMFPEYKQWKVTTNEKKKFSGNLNYVSNNKLGYLIWPYYPFNFLPQCFQPHNLIELDLSRSNIQHLWDSTQPIPKLRRLNLSFCVNLIEVPDFSEALNLESLDLSGCTRLSRFHPSIGFPRNLTNLRLWDCKSLVELPHFEQALNLEYLDLTGCEQLKQLPSSIGRLRKLKFSLDLEECKSLTDLPHFAEDLNFSWLNLRGCIELRQIHPSIGHLRKLSGLVLQNCKSLVKLPDFAEDLNLRQLNLEGCEQLRQIHPSIGHLTKLEVLNLKDCKSLVKLPDFAEDLNLRELNLEGCEQLRQIHPSIGHLTKLVKLNLKDCKSLESLPNNILRLSSLQYLSLFGCSKLYNIRSSEEQRGAGHLKKLRIGEAPSRSQSIFSFFKKGLPWPSVAFDKSLEDAHKDSVRCLLPSLPIFPCMRELDLSFCNLLKIPDAFVNFQCLEELYLMGNNFETLPSLKELSKLLHLNLQHCKRLKYLPELPSRTDLFWWNWTTVDDYEYGLGLNIFNCPELAERDRCPNNCFSWMMQIAHPDLLPLVPPISSIIPGSEIPSWFEKQHLGMGNVINIGRSHFMQHYKNWIGLALSVIFVVHKERRIPPPDMEQPSILSITCGPSIPPQQRKKERPSPYIPVLFREDLVTDESDHLWLFYFTLDLFDDRNFDELEVKCRSRDLLHDQDLVVEVKKYGYRWVHKHDLELLNRSSLKRNFSEIKEN* 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2203 1322 ProSiteProfiles TIR domain profile. 47 217 IPR000157 GO:0007165
Gso6g2203 1322 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 839 886 - -
Gso6g2203 1322 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 793 839 - -
Gso6g2203 1322 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 744 796 - -
Gso6g2203 1322 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 886 1099 - -
Gso6g2203 1322 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 45 744 - -
Gso6g2203 1322 SUPERFAMILY "Winged helix" DNA-binding domain 463 572 IPR036390 -
Gso6g2203 1322 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 195 IPR035897 -
Gso6g2203 1322 PRINTS Disease resistance protein signature 253 268 - -
Gso6g2203 1322 PRINTS Disease resistance protein signature 329 343 - -
Gso6g2203 1322 PRINTS Disease resistance protein signature 427 441 - -
Gso6g2203 1322 PRINTS Disease resistance protein signature 871 887 - -
Gso6g2203 1322 Gene3D - 222 387 IPR027417 -
Gso6g2203 1322 Gene3D - 47 221 IPR035897 -
Gso6g2203 1322 SMART till_3 48 192 IPR000157 GO:0007165
Gso6g2203 1322 Gene3D - 392 476 IPR042197 -
Gso6g2203 1322 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 839 886 IPR044974 GO:0006952
Gso6g2203 1322 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 886 1099 IPR044974 GO:0006952
Gso6g2203 1322 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 744 796 IPR044974 GO:0006952
Gso6g2203 1322 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 45 744 IPR044974 GO:0006952
Gso6g2203 1322 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 793 839 IPR044974 GO:0006952
Gso6g2203 1322 Pfam TIR domain 49 222 IPR000157 GO:0007165
Gso6g2203 1322 ProSiteProfiles Leucine-rich repeat profile. 1050 1071 IPR001611 GO:0005515
Gso6g2203 1322 Gene3D Ribonuclease Inhibitor 595 760 IPR032675 -
Gso6g2203 1322 Pfam NB-ARC domain 236 472 IPR002182 GO:0043531
Gso6g2203 1322 SUPERFAMILY L domain-like 1019 1096 - -
Gso6g2203 1322 Gene3D Ribonuclease Inhibitor 1004 1134 IPR032675 -
Gso6g2203 1322 Gene3D Ribonuclease Inhibitor 852 978 IPR032675 -
Gso6g2203 1322 Gene3D Ribonuclease Inhibitor 761 851 IPR032675 -
Gso6g2203 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 486 IPR027417 -
Gso6g2203 1322 SUPERFAMILY L domain-like 603 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2203 Gso-Chr6 42522983 42537126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2203 733 995 WRKY Transcription Factor Family AT5G45050 28.517 3.76e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2203 - - gmx:100815768 2635.52