Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2198 ATGGCGACGAGAGCAGCAGTGGCGGCGCCGCGCGTTTTGCGGCGGTTTTTCTGCACAAACTCAGCCTCTTCTTCTTTCCCCTTCGTTCCTACGCTGCCTCCCGGTGCCACCCCCGCCCCAACCCGACCCACGGCGGAGCCCAACACCAACCTCTTCGTCTCTGGTCTTAGTAAACGTACTAATACAGAAAGGCTTCGAGAGGAGTTTGCAAAGTTCGGTGAAGTTGTTCATGCAAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAGGGGTTTGGTTTTGTTCAATATGCTACAATAGAAGATGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCTCCACCAGGCCAACCTCTAAATAGCAACAGTTCTCAGTATGGCCGGCAGTGA 438 0.5228 MATRAAVAAPRVLRRFFCTNSASSSFPFVPTLPPGATPAPTRPTAEPNTNLFVSGLSKRTNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPLNSNSSQYGRQ* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2198 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Gso6g2198 145 SMART rrm1_1 50 123 IPR000504 GO:0003723
Gso6g2198 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gso6g2198 145 MobiDBLite consensus disorder prediction 126 145 - -
Gso6g2198 145 PANTHER TRANSFORMER-2-RELATED 1 143 - -
Gso6g2198 145 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 143 - -
Gso6g2198 145 Gene3D - 30 134 IPR012677 -
Gso6g2198 145 SUPERFAMILY RNA-binding domain, RBD 37 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2198 Gso-Chr6 42107159 42109907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2198 48 129 Eukaryotic Initiation Factors Gene Family AT4G34110 32.927 5.68e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2198 - - gmx:100784609 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2198 6 42107159 42109907 Gso6g2198 6 42107159 42109907 ECH
Gso12g1151 12 17065560 17069442 Gso6g2198 6 42107159 42109907 GST