Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2193 ATGAAGTTTATTCTTTCTCTAATGAGTATCATACTTTATACCCTCTTTATCTCTTCTCTTGTAGTTTCCATAGCAGCCGACAAATCATCCAATTCACAGTTTCAGTCCCTCAGTCATGAAGAAACCATAGTTTCCCCAAATGGAGTCTTTGAACTTGGTTTTTTCCCTCTGGGAAATTCCAACAAAAGCTACCTCGCAATTCGGTACAAGAACTATTCGGATGAAACCTTTGTTTGGGTTGCAAACGGTTCCTACCCAATCAATGACTCCTCAGCCAAGTTGACACTACACAGTTCTGGCAGTTTTGTCCTTACACACAACAGCAATCAGGTTTGGTCCACAAGTTCTCTAAAAGTGGCACAGAATCCATTGGCAGAGCTATTAGACTCTGGCAACCTTGTGATAAGAGAGAAAAGTGAAGCAAATTCAGAAGACAAAGAAGAATATCTGTGGCAAAGTTTTGATTACCCTTCTAACACAATGTTGGCAGGGATGAAGATTGGTTGGGACCATAAAAGGAAGCTAAATAGGAGACTCATAGCATGGAAGAGTGATGATGATCCAACACCAGGAGAGTTATCATGGGAAGTTGTGTTGCATCCCTATCCTGAGATCTACATGATGAGGGGAAAAGAGAAGCACCACAGACTTGGACCATGGAATGGATTGCGTTTCAGTGGCATGCCAGAAATGAAGCCTAATCCTGTTTTCCATTACAAATTTGTCTCCAACGAGGAAGAGGTCACCTACATGTGGACCTTGCAGACTAGCTTGATCACAAAAGTGGTGCTCAACCAGACCTCACTAGAGCGTCCTCGCTTCGTGTGGTCCGAGGCCACTGCATCGTGGAACTTCTACTCAACCATGCCAGGGGAGTACTGTGACTATTATGGTGTTTGTGGGGGGAATTCGTTTTGCAGCTCCACTGCATCGCCAATGTGTGAGTGCTTAAAAGGGTTCACGCCAAAGTCTCCAGAGAAATGGAACTCAATGGTTAGGACACAAGGATGTGGCCTTAAAAGTCCATTGACTTGTAAGTCTGATGGATTTGCTCAGGTTGATGGTTTGAAAGTGCCAGATACTACAAATACGTCTGTGTATGAGAGTATTGATCTTGAGAAATGCAGAACCAAGTGCTTGAAAGATTGTTCCTGCATGGCATATACCAATTCTAATATAAGTGGAGCAGGCAGTGGCTGTGTCATGTGGTTTGGTGATTTATTAGACATCAAATTGTATCCAGATCCAGAAAGTGGGCAGCGTCTATATATAAGGTTACCTCCTTCGGAATTAGAGAAATCAATGACAGAAAAGAATTATGAAAGCTATGTGAATGATCTGGATCTCCCATTGCTTGATTTGTCAATAATCATTGCAGCCACAAATAAGTTCTCAGAGGGGAACAAGATTGGAGAAGGTGGCTTTGGATCCGTATATTGGGGAAAATTACCCAGTGGGTTAGAAATTGCTGTGAAGAGACTTTCAAAAAACTCGGATCAAGGAATGAGCGAGTTCGTAAATGAAGTAAAACTGATTGCAAAAGTTCAACACCGAAATCTTGTAAAGCTTCTTGGCTGTTGCATTAAAAAACAAGAGATAATGCTAGTTTATGAATACATGGTTAACGGCAGCCTTGACTACTTCATTTTTGATAGTACCAAAGGGAAATTGCTAGATTGGCCAAAGCGTTTCCACATAATTTGTGGAATTGCTCGCGGGCTTATGTACCTTCATCAAGATTCTCGATTGAGGATTATCCATAGAGATCTAAAAGCAAGTAATGTTTTACTAGACGACACTTTGAATCCCAAAATTTCAGATTTTGGAGTGGCTAAAACTTTTGGAGGAGAGAATATTGAAGGAAACACAACCAGAATTGTTGGAACATATGGGTACATGGCACCAGAATATGCTATTGATGGACAATTTTCTATAAAATCTGATGTCTTCAGCTTTGGTGTTTTGCTGTTGGAGATTATATGTGGGAAGAGAAGTAGATGTTCTAGTGGAAATCAAATCGTTCACCTTGTTGATCATGTGTGGACACTCTGGAAAAAGGATATGGCTTTACAAATAGTTGACCCAAACATGGAGGATTCTTGTATTGCATCTGAAGTATTACGTTGCATCCATATTGGACTCTTGTGCGTGCAACAATATCCAGAGGATAGGCCTACAATGACCTCAGTGGTTCTATTGTTGGGGAGTGAGGTGGAATTGGATGAAGCTAAAGAGCCAGGGGATTTTCCGAAGAAGGAATCTATTGAAGCAAATTCAAGCTCATTTAGTTCAACCAATGCAATGTCCACAACCTTATTAACTGCTCGCTGA 2331 0.4118 MKFILSLMSIILYTLFISSLVVSIAADKSSNSQFQSLSHEETIVSPNGVFELGFFPLGNSNKSYLAIRYKNYSDETFVWVANGSYPINDSSAKLTLHSSGSFVLTHNSNQVWSTSSLKVAQNPLAELLDSGNLVIREKSEANSEDKEEYLWQSFDYPSNTMLAGMKIGWDHKRKLNRRLIAWKSDDDPTPGELSWEVVLHPYPEIYMMRGKEKHHRLGPWNGLRFSGMPEMKPNPVFHYKFVSNEEEVTYMWTLQTSLITKVVLNQTSLERPRFVWSEATASWNFYSTMPGEYCDYYGVCGGNSFCSSTASPMCECLKGFTPKSPEKWNSMVRTQGCGLKSPLTCKSDGFAQVDGLKVPDTTNTSVYESIDLEKCRTKCLKDCSCMAYTNSNISGAGSGCVMWFGDLLDIKLYPDPESGQRLYIRLPPSELEKSMTEKNYESYVNDLDLPLLDLSIIIAATNKFSEGNKIGEGGFGSVYWGKLPSGLEIAVKRLSKNSDQGMSEFVNEVKLIAKVQHRNLVKLLGCCIKKQEIMLVYEYMVNGSLDYFIFDSTKGKLLDWPKRFHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDDTLNPKISDFGVAKTFGGENIEGNTTRIVGTYGYMAPEYAIDGQFSIKSDVFSFGVLLLEIICGKRSRCSSGNQIVHLVDHVWTLWKKDMALQIVDPNMEDSCIASEVLRCIHIGLLCVQQYPEDRPTMTSVVLLLGSEVELDEAKEPGDFPKKESIEANSSSFSSTNAMSTTLLTAR* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2193 776 Pfam S-locus glycoprotein domain 216 324 IPR000858 GO:0048544
Gso6g2193 776 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 36 433 - -
Gso6g2193 776 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 438 775 - -
Gso6g2193 776 PIRSF SRK 429 776 IPR024171 GO:0004674
Gso6g2193 776 PIRSF SRK 1 446 IPR024171 GO:0004674
Gso6g2193 776 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 188 IPR036426 -
Gso6g2193 776 Pfam D-mannose binding lectin 76 183 IPR001480 -
Gso6g2193 776 ProSiteProfiles Protein kinase domain profile. 464 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2193 776 CDD STKc_IRAK 470 731 - -
Gso6g2193 776 SMART blect_4 34 157 IPR001480 -
Gso6g2193 776 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Gso6g2193 776 SUPERFAMILY Protein kinase-like (PK-like) 452 749 IPR011009 -
Gso6g2193 776 Pfam PAN-like domain 345 410 IPR003609 -
Gso6g2193 776 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Gso6g2193 776 Gene3D Phosphorylase Kinase; domain 1 429 539 - -
Gso6g2193 776 Gene3D Transferase(Phosphotransferase) domain 1 540 749 - -
Gso6g2193 776 CDD B_lectin 35 157 IPR001480 -
Gso6g2193 776 ProSitePatterns Protein kinases ATP-binding region signature. 470 492 IPR017441 GO:0005524
Gso6g2193 776 Pfam Protein tyrosine and serine/threonine kinase 467 731 IPR001245 GO:0004672|GO:0006468
Gso6g2193 776 Gene3D - 25 154 IPR036426 -
Gso6g2193 776 ProSiteProfiles PAN/Apple domain profile. 345 427 IPR003609 -
Gso6g2193 776 CDD PAN_AP_plant 342 427 - -
Gso6g2193 776 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 438 775 - -
Gso6g2193 776 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 433 - -
Gso6g2193 776 SMART serkin_6 464 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2193 776 SMART ntp_6 345 426 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2193 Gso-Chr6 42031932 42036646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2193 452 776 Receptor kinase-like Gene Family AT3G45860 54.386 1.02e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2193 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2193 - - gmx:106798964 1540.4