Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2190 ATGAAGTTTATTCTTACTCTGACGAGTTTCATACTTTATATACTGTTTGTCTCTTCTCTTGTAGTTTCCATAGCAGCAGACACATCATCCATTTCACAATCCCAATCCCTCAGTTTTGGAAGAACCATAGTTTCTCCAAATGGAGTCTTTGAACTTGGATTCTTCAATCTTGGAAATCCAAACAAAAGCTACCTCGGGATTTGGTTCAAGAATATTCCGTCTCAAAACATTGTTTGGGTTGCAAACGGTGGCAACCCAATTAATGATTCCTTTGCCATCTTGAGCCTAAACAGTTCTGGCCATTTGGTCCTTACACACAACAACACTGTTGTTTGGTCCACAAGTTCTCTAAGAGAAACACAGAATCCAGTGGCAAAGCTCTTGGATTCTGGGAATCTTGTGATAAGGGATGAAAATGAAGTGAATCAAGAGGCATATCTGTGGCAAAGTTTTGATTATCCTTCTAATACAGGGTTATCAGGAATGAAGATTGGATGGTACCTCAAAAGAAATCTCAGTATTCACCTTACAGCTTGGAAGAGTGATGATGATCCAACCCCGGGAGACTTCACTTGGGGTATTGTTCTGCACCCTTATCCTGAAATCTATTTGATGAAGGGAACCAAAAAGTACTACAGAGTCGGACCATGGAATGGTTTGAGTTTCGGTAATGGCAGTCCAGAACTTAACAATTCAATTTACTATCACGAGTTTGTCTCTGACGAGGAAGAAGTTTCTTACACGTGGAACCTGAAGAATGCAAGCTTTTTATCCAAAGTGGTAGTTAACCAAACCACAGAAGAACGTCCTCGTTATGTATGGTCAGAGACAGAGTCATGGATGCTTTATTCAACTAGGCCTGAAGACTATTGTGACCATTATGGGGTTTGTGGAGCCAATGCATATTGCAGCACTACTGCATCACCAATCTGTGAGTGTTTAAAAGGGTACACGCCTAAGTCTCCTGAAAAATGGAAATCAATGGACAGGACCCAAGGATGTGTCCTCAAACATCCATTGAGTTGCAAGTATGATGGTTTTGCCCAGGTTGATGACTTGAAAGTGCCTGATACTAAAAGAACACATGTGGATCAGACTCTTGATATAGAGCAATGCAGAACCAAGTGCTTGAATGATTGTTCCTGTATGGCATATACCAATTCTAATATAAGTGGAGCTGGAAGTGGCTGTGTCATGTGGTTTGGTGATTTATTAGACATCAAATTGTATTCTGTTGCAGAAAGTGGGCGGCGTCTACATATAAGGTTGCCTCCTTCTGAATTAGAATCTATCAAGAGCAAGAAGAGCTCCAAAATAATTATTGGAACCTCCGTTGCTGCACCTTTAGGAGTTGTACTTGCTATTTGTTTCATCTACAGAAGGAACATTGCCGATAAGTCAAAGACAAAAAAGAGCATTGACAGACAACTACAAGACGTGGATGTGCCATTGTTTGATATGCTAACAATCACTGCTGCCACTGACAATTTTTTATTGAACAATAAAATTGGAGAAGGTGGCTTTGGACCTGTTTATAAGGGAAAATTAGTGGGTGGGCAAGAAATTGCTGTGAAGAGGCTTTCAAGTTTGTCTGGACAAGGAATAACCGAATTCATAACAGAAGTAAAACTGATTGCAAAGCTTCAACACAGAAATCTTGTAAAGCTCCTTGGCTGTTGCATAAAAGGACAAGAAAAATTACTAGTATATGAATACGTGGTTAATGGCAGCCTAAACTCCTTCATATTTGATCAAATAAAAAGTAAATTATTGGATTGGCCACGACGCTTCAACATAATACTTGGAATTGCAAGGGGGCTATTGTATCTTCATCAAGATTCTCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTCTACTAGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCAAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGAGTAGTTGGGACTTATGGATACATGGCCCCGGAGTATGCATTTGATGGGAATTTTTCAATCAAGTCTGATGTTTTCAGCTTTGGTATATTGTTGTTGGAGATTGTATGTGGAATAAAAAATAAATCTCTTTGTCACGAAAACCTAACTCTTAACCTTGTTGGTTACGCATGGGCACTTTGGAAAGAGCAAAATGCTTTACAGCTGATTGACTCAGGCATAAAGGACTCATGTGTTATCCCAGAAGTACTGCGATGCATCCATGTTAGTCTCTTGTGTGTGCAACAATACCCGGAGGATAGGCCAACCATGACTTCAGTAATTCAAATGTTAGGGAGTGAAATGGATATGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGATTTTGAAAGAAGGAAATCTAAAGGAAATGACTTCAAATGATGAATTAACCATTAGCTTATTTAGTGGTCGGTGA 2433 0.3933 MKFILTLTSFILYILFVSSLVVSIAADTSSISQSQSLSFGRTIVSPNGVFELGFFNLGNPNKSYLGIWFKNIPSQNIVWVANGGNPINDSFAILSLNSSGHLVLTHNNTVVWSTSSLRETQNPVAKLLDSGNLVIRDENEVNQEAYLWQSFDYPSNTGLSGMKIGWYLKRNLSIHLTAWKSDDDPTPGDFTWGIVLHPYPEIYLMKGTKKYYRVGPWNGLSFGNGSPELNNSIYYHEFVSDEEEVSYTWNLKNASFLSKVVVNQTTEERPRYVWSETESWMLYSTRPEDYCDHYGVCGANAYCSTTASPICECLKGYTPKSPEKWKSMDRTQGCVLKHPLSCKYDGFAQVDDLKVPDTKRTHVDQTLDIEQCRTKCLNDCSCMAYTNSNISGAGSGCVMWFGDLLDIKLYSVAESGRRLHIRLPPSELESIKSKKSSKIIIGTSVAAPLGVVLAICFIYRRNIADKSKTKKSIDRQLQDVDVPLFDMLTITAATDNFLLNNKIGEGGFGPVYKGKLVGGQEIAVKRLSSLSGQGITEFITEVKLIAKLQHRNLVKLLGCCIKGQEKLLVYEYVVNGSLNSFIFDQIKSKLLDWPRRFNIILGIARGLLYLHQDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAFDGNFSIKSDVFSFGILLLEIVCGIKNKSLCHENLTLNLVGYAWALWKEQNALQLIDSGIKDSCVIPEVLRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMDMVEPKEPGFFPRRILKEGNLKEMTSNDELTISLFSGR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2190 810 Gene3D - 22 151 IPR036426 -
Gso6g2190 810 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Gso6g2190 810 ProSiteProfiles PAN/Apple domain profile. 342 424 IPR003609 -
Gso6g2190 810 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Gso6g2190 810 CDD B_lectin 40 154 IPR001480 -
Gso6g2190 810 SMART ntp_6 342 423 IPR003609 -
Gso6g2190 810 ProSiteProfiles Protein kinase domain profile. 497 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2190 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Gso6g2190 810 Pfam D-mannose binding lectin 77 180 IPR001480 -
Gso6g2190 810 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Gso6g2190 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 185 IPR036426 -
Gso6g2190 810 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 37 809 - -
Gso6g2190 810 PIRSF SRK 1 810 IPR024171 GO:0004674
Gso6g2190 810 SMART blect_4 34 154 IPR001480 -
Gso6g2190 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 809 - -
Gso6g2190 810 Pfam Protein tyrosine and serine/threonine kinase 499 768 IPR001245 GO:0004672|GO:0006468
Gso6g2190 810 CDD STKc_IRAK 503 768 - -
Gso6g2190 810 Pfam PAN-like domain 342 407 IPR003609 -
Gso6g2190 810 CDD PAN_AP_plant 338 424 - -
Gso6g2190 810 Gene3D Transferase(Phosphotransferase) domain 1 573 779 - -
Gso6g2190 810 SUPERFAMILY Protein kinase-like (PK-like) 475 768 IPR011009 -
Gso6g2190 810 SMART serkin_6 497 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2190 810 Gene3D Phosphorylase Kinase; domain 1 458 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2190 Gso-Chr6 41965666 41972481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2190 439 792 Receptor kinase-like Gene Family AT4G23190 51.381 2.10e-120 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2190 PK_Tyr_Ser-Thr 5.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2190 - - gmx:100810955 1607.04