Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2189 ATGAGGTTCGTTCATTTTCTGATGAATATCATAATTTATACACTGTTTGACACTTTTCTCTTAGTTTTCGAAGCAGCAGGAACATCGTCATTCATAGCACAATACCAGTCCCTCAGTTATGGGAAGAGCATAGTTTCTTCCCCACGTGGAACCTATGAGCTTTGTTTCTTTAACCTTGGAAATCCAAACAAAATCTACCTTGGGATTCGGTACAAGAATATTCCAACTCAAAACGTTGTTTGGGTTGCAAACGGTGGCAACCCAATCAATGATTCCTCTACCATCTTGGAACTAAATAGTTCTGGCAACTTGGTCCTTACACACAACAACATGGTTGTTTGGTCCACAAGTTATCGAAAAGCAGCACAGAATCCCGTGGCGGAGCTCTTGGATTCTGGCAACCTTGTGATAAGAGAGAAAAATGAAGCAAAACCAGAAGAGGAAGAATATCTATGGCAAAGTTTTGACTACCCTTCTAACACAATGTTGGCAGGAATGAAGGTTGGATGGGACCTCAAAAGAAATTTTAGTATTCGCCTCGTAGCTTGGAAGAGTTTTGATGATCCAACACCAGGAGACTTATCTTGGGGTGTTACTCTGCACCCCTATCCTGAGTTCTATATGATGAAAGGAACCAAAAAGTATCACAGACTTGGACCGTGGAATGGTTTGCGTTTTAGTGGCAGACCGGAAATGGCAGGTAGTGATCCCATTTACCATTTTGATTTTGTCTCCAACAAGGAAGAGGTTTATTACACCTGGACCCTCAAGCAGACTAATTTGTTATCGAAATTGGTACTTAACCAAACCACACAAGAACGTCCTCGTTATGTATGGTCAGAGACTGAAAAAGCATGGATGTTTTATACAACGATGCCGGAAGACTACTGTGACCATTATGGGGTTTGTGGAGCTAATTCATATTGCAGCACTTCTGCATATCCAATGTGTGAGTGTTTAAAAGGGTTCAAGCCTAAGTCCCCGGAAAAATGGAACTCAATGGGCTGGACCGAAGGATGTGTCCTCAAACATCCATTGAGTTGCATGAATGATGGGTTTTTCCTCGTGGAAGGCTTGAAAGTGCCGGATACTAAACATACTTTTGTGGATGAGAGTATTGATCTAGAGCAATGCAAAACCAAGTGCTTGAATGATTGTTCTTGCATGGCATATACCAATTCTAATATAAGTGGAGCAGGCAGTGGCTGTGTCATGTGGTTTGGTGATTTAATTGACATCAAATTGTATCCTGTTCCAGAAAAAGGGCAGGATCTATATATAAGGTTGCCTTCTTCAGAATTAGAGTCTATCAGGGACAAGAAGGACTCAAAAATAATAATAATTGCAACCTCCATCGGTGCCACTTTAGGAGTTATACTTGCTATTTATTTCGTCTACAGAAGGAACATTGCTGAGATGTCAAATGCAGAAAATAACCATGAAGAGCCTCTGCCACAACATGGACATAACCGATGGAACATTGCTGATAAGTCAAAGACAAAAGAGAACATTAAAAGGCAGCTAAAAGATCTGGATGTGCCATTGTTTGATCTGCTAACAATTACTACGGCCACTAACAATTTCTCGTCGAATAATAAGATTGGACAAGGTGGTTTTGGACCTGTATATAAGGGAAAACTTGTGGATGGGAGAGACATTGCCGTCAAGAGACTCTCAAGTGGGTCTGGACAAGGAATAGTGGAGTTCATAACAGAAGTAAAACTGATTGCGAAGCTTCAACACCGAAATCTTGTAAAGCTCCTCGGCTGTAGCTTTCCAAAACAAGAAAAATTACTGTTATATGAATACATGGTTAATGGAAGCCTAGACTCCTTCATTTTTGATCAACAAAAAGGTAAATTGTTGGATTGGCCTCAACGCTTCCACATAATTTTTGGAATTGCTAGGGGACTTTTGTATCTTCATGAAGATTCCCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGAGAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGAGTAGTTGGGACTTACGGATACATGGCTCCAGAATATGCTGTTGATGGGCTATTTTCAATCAAATCGGATGTTTTCAGTTTTGGTATTTTATTGTTAGAGATTATATGTGGGAACAAAAATAGATCTCTTTGTCATGGAAACCAGACTCTTAACCTTGTTGGCTATGCATGGACTCTTTGGAAAGAGCAAAATACTTCACAGTTGATTGACTCAAACATAAAGGACTCATGTGTCATCCCAGAAGTATTACGATGCATCCATGTCAGTCTCTTGTGTGTGCAACAATACCCAGAGGATAGGCCAACCATGACCTCAGTAATTCAAATGTTAGGGAGTGAAATGGAACTGGTTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGATTTCGGATGAAAGAAATTTAAGCTCAAATCTAAACCAAACGATTTCAAATGATGAAATAACCATTACCACATTAAAAGGCCGCTGA 2538 0.3991 MRFVHFLMNIIIYTLFDTFLLVFEAAGTSSFIAQYQSLSYGKSIVSSPRGTYELCFFNLGNPNKIYLGIRYKNIPTQNVVWVANGGNPINDSSTILELNSSGNLVLTHNNMVVWSTSYRKAAQNPVAELLDSGNLVIREKNEAKPEEEEYLWQSFDYPSNTMLAGMKVGWDLKRNFSIRLVAWKSFDDPTPGDLSWGVTLHPYPEFYMMKGTKKYHRLGPWNGLRFSGRPEMAGSDPIYHFDFVSNKEEVYYTWTLKQTNLLSKLVLNQTTQERPRYVWSETEKAWMFYTTMPEDYCDHYGVCGANSYCSTSAYPMCECLKGFKPKSPEKWNSMGWTEGCVLKHPLSCMNDGFFLVEGLKVPDTKHTFVDESIDLEQCKTKCLNDCSCMAYTNSNISGAGSGCVMWFGDLIDIKLYPVPEKGQDLYIRLPSSELESIRDKKDSKIIIIATSIGATLGVILAIYFVYRRNIAEMSNAENNHEEPLPQHGHNRWNIADKSKTKENIKRQLKDLDVPLFDLLTITTATNNFSSNNKIGQGGFGPVYKGKLVDGRDIAVKRLSSGSGQGIVEFITEVKLIAKLQHRNLVKLLGCSFPKQEKLLLYEYMVNGSLDSFIFDQQKGKLLDWPQRFHIIFGIARGLLYLHEDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRSLCHGNQTLNLVGYAWTLWKEQNTSQLIDSNIKDSCVIPEVLRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPRRISDERNLSSNLNQTISNDEITITTLKGR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2189 845 SMART serkin_6 528 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2189 845 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 39 844 - -
Gso6g2189 845 CDD B_lectin 36 158 IPR001480 -
Gso6g2189 845 SUPERFAMILY Protein kinase-like (PK-like) 509 799 IPR011009 -
Gso6g2189 845 Gene3D - 25 155 IPR036426 -
Gso6g2189 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Gso6g2189 845 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Gso6g2189 845 ProSiteProfiles Protein kinase domain profile. 528 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2189 845 ProSiteProfiles PAN/Apple domain profile. 348 430 IPR003609 -
Gso6g2189 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 189 IPR036426 -
Gso6g2189 845 Pfam PAN-like domain 348 413 IPR003609 -
Gso6g2189 845 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Gso6g2189 845 Pfam D-mannose binding lectin 79 184 IPR001480 -
Gso6g2189 845 Gene3D Phosphorylase Kinase; domain 1 489 603 - -
Gso6g2189 845 Pfam Protein tyrosine and serine/threonine kinase 531 799 IPR001245 GO:0004672|GO:0006468
Gso6g2189 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Gso6g2189 845 Gene3D Transferase(Phosphotransferase) domain 1 604 809 - -
Gso6g2189 845 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 39 844 - -
Gso6g2189 845 CDD STKc_IRAK 534 799 - -
Gso6g2189 845 SMART blect_4 35 158 IPR001480 -
Gso6g2189 845 SMART ntp_6 348 429 IPR003609 -
Gso6g2189 845 CDD PAN_AP_plant 344 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2189 Gso-Chr6 41941091 41945086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2189 516 840 Receptor kinase-like Gene Family AT4G23150 54.908 2.39e-117 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2189 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2189 - - gmx:100809353 1707.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1162 12 17386684 17402027 Gso6g2189 6 41941091 41945086 GST
Gso11g3027 11 46125311 46129622 Gso6g2189 6 41941091 41945086 PCT
Gso6g2189 6 41941091 41945086 Gso11g3027 11 46125311 46129622 PCT