Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2188 ATGAAGTTTATTCTTTCCCTGAAGAGTTTCATCTATATACTATTTTTCCCTTCTCTTGTAGTTTCCATAGTACCAGACAGATCATCAATTTCACAGTTCCAATCCCTCAGTTATGGAAAGACCATAGTTTCTTCCCCACATGGAATGTTCGAGCTTGGTTTCTTCAATCTTGGATATCCCAACAGAATCTACCTCGGTATTCGGTACAAGAATATTCCAGTTGACAATGTTGTTTGGGTTGCAAACGGTGGCAACCCAATCAATGATTCCTCTGCCGACTTGAAACTACACAGTTCTGGCAATTTGGTCCTTACACACAACAACATGGTTGCTTGGTGCACAAGGTCTTCAAAAGCAGCACAGAATCCTGTGGCAGAACTCCTGGATTCTGGCAATCTTGTGATAAGAGATCTGAATTCAGCGAATCAAGAGTCATATCTATGGCAAAGCTTTGATTACCCATCTAATACAATGCTATCAGGAATGAAGGTTGGATGGGACCTCAAAAGAAATCTCAACATTCGCCTCATAGCTTGGAAGAGTGGTGATGATCCAACACCAGGAGACTTATCATGGAGTATTGTGCGGCATCCCTATCCTGAGATCTATATGATGAAGGGAAACAAAAAGTATCACAGACTTGGACCATGGAATGGGTTGCGCTTCACCGGCATGCCAGAAATGAAGCCTAATCCAGTTTACCATTACGAGTTTGTCTCCAACAAGGAAGAGGTTTACTACACATGGACCCTCAAGCAGACTAGTTTAATAACAAAAGCTGTACTTAACCAAACGGCCCTAGCGCGTCCTCGTTATGTATGGTCGGAGCTTGATGAATCATGGATGTTTTATTCAACCTTGCCATCAGACTACTGTGATCATTATGGCGTTTGTGGAGCCAACGCATATTGCAGCACGTCTGCGTCACCAATGTGTGAGTGCTTGAAAGGGTTCAAACCTAAGTATCTTGAAAAATGGAACTCAATGGACTGGTCCCAAGGATGTGTCCTGCAACATCCATTGAATTGCAAGCATGATGGGTTTGTCCTTTTGGAAGGATTGAAAGTGCCAGATACAAAAGCTACGTTTGTGAATGATAGTATTGATATAGAGAAATGCAGAACCAAGTGCTTGAATAATTGTTCTTGCATGGCTTATACAAATTCTAATATAAGTGGAGCAGGCAGTGGTTGTGTCATGTGGCTTGGGGATTTATTTGACATCAAACAGTATTCAGTTGCTGAAAATGGGCAGGGTCTATATATCCGGTTGCCTGCTTCAGAATTAGAGGCTATCAGGCAGAGGAATTTTAAAATAAAACATGTAACCATAGTCACTGCAGCTTCAGGAATGCTTGTACTTGGTATTTATTTTATCTACAGAATCTGGAGGAACATCAATGAAAAGTCAAAAGCAGAAAATAACTACGAAGGGTTTGTGGATGATTTGGATCTTCCATTGCTTGATTTGTCAATAATTTTGGCTGCCACTGATAATTTCTCAGAGGTGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATATTGGGGAAAGCTAGCCAGTGGACTAGAAATTGCTGCAAAGAGACTTTCACAGAACTCGGGACAAGGAATATCCGAGTTTGTAAATGAAGTTAAACTGATAGCAAAACTTCAGCACAGAAATCTTGTAAAGCTTCTAGGCTGTTGTATTCATAAGCAAGAAAAAATATTGGTTTATGAATACATGGCTAACGGCAGCCTAGACTACTTCATTTTTGATCACACCAAAGGTAAATCACTTGACTGGCCTAAGCGGTTGAGCATAATTTGTGGAATTGCTCGAGGGCTTATGTATCTTCATCAAGATTCTCGACTAAGGATTATTCATAGAGATCTCAAAGGAAGTAATGTTCTACTAGATGAAGATTTCAATCCAAAAATATCAGATTTTGGAATGGCTAAAACTGTTGGAAGAGAGGAGATTGAAGGAAACACAAATAAAATAGTTGGAACATTTGGGTACATGGCTCCTGAGTATGCTGTTGATGGGCAATTTTCTGTGAAATCTGATGTCTTCAGCTTTGGTATTTTACTCATGGAGATAATATGTGGCAAAAGAAATAGAGGGCGCTATAGTGGAAAGCGATATAACCTTATTGATCATGTATGGACACACTGGAAATTGAGCAGGACTTCCGAAATAATTGACTCAAACATTGAAGATTCATGCATTGAATCTGAAATCATACGTTGCATCCATGTTGGGCTGTTGTGCGTGCAACAATACCCAGAGGATAGGCCTACAATGACTTCAGTAGTTCTAATGTTGGGGAGTGAGATGGAATTGGATGAGCCTAAAAAGCCAGGTGTTTTCACGAAGAAGGAATCTATTGAAGCAATCTCAAGTAGTTCAACCAATACACTAACCATAACCTTAAGTGCTCGGTGA 2430 0.4029 MKFILSLKSFIYILFFPSLVVSIVPDRSSISQFQSLSYGKTIVSSPHGMFELGFFNLGYPNRIYLGIRYKNIPVDNVVWVANGGNPINDSSADLKLHSSGNLVLTHNNMVAWCTRSSKAAQNPVAELLDSGNLVIRDLNSANQESYLWQSFDYPSNTMLSGMKVGWDLKRNLNIRLIAWKSGDDPTPGDLSWSIVRHPYPEIYMMKGNKKYHRLGPWNGLRFTGMPEMKPNPVYHYEFVSNKEEVYYTWTLKQTSLITKAVLNQTALARPRYVWSELDESWMFYSTLPSDYCDHYGVCGANAYCSTSASPMCECLKGFKPKYLEKWNSMDWSQGCVLQHPLNCKHDGFVLLEGLKVPDTKATFVNDSIDIEKCRTKCLNNCSCMAYTNSNISGAGSGCVMWLGDLFDIKQYSVAENGQGLYIRLPASELEAIRQRNFKIKHVTIVTAASGMLVLGIYFIYRIWRNINEKSKAENNYEGFVDDLDLPLLDLSIILAATDNFSEVNKIGEGGFGPVYWGKLASGLEIAAKRLSQNSGQGISEFVNEVKLIAKLQHRNLVKLLGCCIHKQEKILVYEYMANGSLDYFIFDHTKGKSLDWPKRLSIICGIARGLMYLHQDSRLRIIHRDLKGSNVLLDEDFNPKISDFGMAKTVGREEIEGNTNKIVGTFGYMAPEYAVDGQFSVKSDVFSFGILLMEIICGKRNRGRYSGKRYNLIDHVWTHWKLSRTSEIIDSNIEDSCIESEIIRCIHVGLLCVQQYPEDRPTMTSVVLMLGSEMELDEPKKPGVFTKKESIEAISSSSTNTLTITLSAR* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2188 809 SMART serkin_6 500 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2188 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Gso6g2188 809 PIRSF SRK 1 808 IPR024171 GO:0004674
Gso6g2188 809 Pfam Protein tyrosine and serine/threonine kinase 503 768 IPR001245 GO:0004672|GO:0006468
Gso6g2188 809 ProSiteProfiles Protein kinase domain profile. 500 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2188 809 CDD STKc_IRAK 506 770 - -
Gso6g2188 809 Pfam PAN-like domain 343 408 IPR003609 -
Gso6g2188 809 Gene3D Phosphorylase Kinase; domain 1 463 575 - -
Gso6g2188 809 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Gso6g2188 809 ProSiteProfiles PAN/Apple domain profile. 343 425 IPR003609 -
Gso6g2188 809 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 36 796 - -
Gso6g2188 809 CDD PAN_AP_plant 339 425 - -
Gso6g2188 809 Pfam D-mannose binding lectin 77 180 IPR001480 -
Gso6g2188 809 CDD B_lectin 34 154 IPR001480 -
Gso6g2188 809 SMART ntp_6 343 424 IPR003609 -
Gso6g2188 809 Gene3D - 22 151 IPR036426 -
Gso6g2188 809 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 36 796 - -
Gso6g2188 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gso6g2188 809 Gene3D Transferase(Phosphotransferase) domain 1 576 789 - -
Gso6g2188 809 SUPERFAMILY Protein kinase-like (PK-like) 488 774 IPR011009 -
Gso6g2188 809 SMART blect_4 33 154 IPR001480 -
Gso6g2188 809 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2188 Gso-Chr6 41928040 41932112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2188 442 798 Receptor kinase-like Gene Family AT4G23190 48.066 2.81e-116 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2188 PK_Tyr_Ser-Thr 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2188 - - gmx:100808807 1634