Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2187 ATGCTGAACCCATATTATCGGTATCCAAAAAACCTTGTATTAGGAGTCGGAAAGAAAATCATGATGAACAGAACCAATATTAGTCTCCCAAATCCAATATACCATTTCATGATTATTGTAGCTTACATGCTTGTTCCTTCTCTCAAAATTTCAGCAGCTATCCTCAGTGTGTCACAGTTTATCACTGAGAGCCAGACTTTAGTGTCCCACAGAGGAGTGTTTGAGCTTGGTTTCTTCAGCCCGGGCAATTCGAAAAACCGTTACCTGGGGATTTGGTATAAAACCATAACTATTGATAGAGTTGTTTGGGTCGCAAACTGGGCGAACCCAATCAATGATTCCGCCGGCATCTTAACTTTCAGCAGCACAGGCAATCTTGAACTCAGACAACATGACTCAGTTGCTTGGTCTACTACCTACAGAAAACAAGCACAGAATCCAGTGGCGGAGCTCTTGGACAATGGCAATCTTGTGGTAAGAAATGAGGGAGACACCGACCCCGAAGCCTACTTGTGGCAAAGTTTTGACTATCCATCTGATACGCTTTTGCCCGGGATGAAGCTGGGATGGGACCTCCGAACTGCTCTGGAATGGAAAATAACGGCTTGGAAGAGTCCAGAAGATCCATCCCCAGGAGATTTTTCTTTCAGGTTAAATCTCTATAATTATCCTGAGTTTTATCTGATGAAAGGAAGAGTAAAGTATCACCGCCTTGGACCGTGGAATGGACTTTATTTTAGTGGCGCAACAAATCAAAACCCAAACCAGTTGTACGAAATCAAGTATGTAGTTAAAAACGATTCCATGTACGTGATGAATGAGGTTGAGAAGTTCTGTTTCTTGACAGTCAAGAATAGTTCTGCAGCTGCTATTGTGAGAGTCAAAATCACGGAAACCAGTCTGCAAATCCAGGTATGGGAAGAGGAAAGACAATATTGGAGCATTTATACAACTATCCCGGGTGACAGATGCGACGAGTATGCGGTGTGTGGAGCCTATGGGAATTGCAGGATTTCACAGTCACCAGTATGCCAGTGTTTAGAAGGATTCACACCAAGGTCACAACAAGAATGGAGCACAATGGATTGGAGCCAAGGATGTGTTGTCAATAAATCGTCAAGCTGCGAAGGTGATCGGTTTGTCAAACATCCAGGTCTGAAAGTACCAGAAACTGATCATGTTGATCTGTATGAGAATATTGATTTAGAGGAATGCAGAGAGAAATGCTTGAATAATTGCTATTGTGTGGCATATACTAATTCAGACATAAGAGGAGGAGGTAAGGGTTGTGTCCATTGGTATTTCGAACTAAATGACATTAGACAGTTTGAAACTGGAGGGCAAGATCTATATATCCGGATGCCTGCTTTGGAGTCAGTCAACCAAGAAGAGCAACATGGACACACCACAAGCGTGAAGATAAAAATTGCAACCCCAATTGCTGCAATTAGTGGGATACTTTTATTTTGCATTTTTGTTATGTACAGAGTTCGAAGGAGCAGTGCTGATAAGTCAAAGACAAAAGATAATTTAAAAAAACAGCTAGAAGATCTGGATCTACGATTATTTGATCTGCTAACAATCACTACTGCCACAAACAATTTCTCGTTGAATAACAAGATTGGACAAGGTGGTTTTGGACCTGTATATAAGGGAAAATTAGCAGATGGCAGAGATGTTGCAGTCAAGAGACTTTCAAGCAGTTCTGGACAAGGAATAACTGAGTTTATGACAGAAGTTAAACTAATTGCGAAGCTTCAACATCGAAATCTGGTAAAGCTTCTTGGCTGTTGCATTAGAGGACAAGAAAAAATACTAGTATATGAATACATGGTTAATGGCAGCCTTGACTCCTTTGTTTTTGACCAAATAAAAGGTAAATTTCTGGACTGGCCTCAACGGCTCGACATAATATTTGGAATAGCTAGGGGGCTTTTGTACCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTCAAGGCAAGTAACATTTTACTCGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGAGTCGTTGGTACTTACGGTTACATGGCTCCAGAGTACGCAGTTGATGGCCTATTTTCAATCAAATCTGATGTTTTCAGTTTTGGTATTTTATTGTTAGAGATTATATGCGGAAATAAAAATAGAGCTCTTTGTCATGGAAACCAAACTCTTAATCTCGTTGGCTATGCATGGACACTTTGGAAAGAGCAAAATGTTTTACAGTTGATTGACTCAAACATAATGGACTCATGTGTTATCCAAGAAGTATTGCGATGCATTCATGTTAGTCTCTTGTGCGTGCAACAATACCCAGAGGATAGGCCAACCATGACTTCGGTAATTCAAATGTTAGGGAGTGAGATGGAACTGGTTGAACCAAAAGAGCCGGGTTTCTTTCCAAGGAGGATTTCAAATGAAGGAAAGTTACTAGCAAATCTAAACCAAATGACTTCAAATAATGAGTTAACCATTACCTTATTAAATGCCAGGTGA 2559 0.4025 MLNPYYRYPKNLVLGVGKKIMMNRTNISLPNPIYHFMIIVAYMLVPSLKISAAILSVSQFITESQTLVSHRGVFELGFFSPGNSKNRYLGIWYKTITIDRVVWVANWANPINDSAGILTFSSTGNLELRQHDSVAWSTTYRKQAQNPVAELLDNGNLVVRNEGDTDPEAYLWQSFDYPSDTLLPGMKLGWDLRTALEWKITAWKSPEDPSPGDFSFRLNLYNYPEFYLMKGRVKYHRLGPWNGLYFSGATNQNPNQLYEIKYVVKNDSMYVMNEVEKFCFLTVKNSSAAAIVRVKITETSLQIQVWEEERQYWSIYTTIPGDRCDEYAVCGAYGNCRISQSPVCQCLEGFTPRSQQEWSTMDWSQGCVVNKSSSCEGDRFVKHPGLKVPETDHVDLYENIDLEECREKCLNNCYCVAYTNSDIRGGGKGCVHWYFELNDIRQFETGGQDLYIRMPALESVNQEEQHGHTTSVKIKIATPIAAISGILLFCIFVMYRVRRSSADKSKTKDNLKKQLEDLDLRLFDLLTITTATNNFSLNNKIGQGGFGPVYKGKLADGRDVAVKRLSSSSGQGITEFMTEVKLIAKLQHRNLVKLLGCCIRGQEKILVYEYMVNGSLDSFVFDQIKGKFLDWPQRLDIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHGNQTLNLVGYAWTLWKEQNVLQLIDSNIMDSCVIQEVLRCIHVSLLCVQQYPEDRPTMTSVIQMLGSEMELVEPKEPGFFPRRISNEGKLLANLNQMTSNNELTITLLNAR* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2187 852 Pfam Protein tyrosine and serine/threonine kinase 536 806 IPR001245 GO:0004672|GO:0006468
Gso6g2187 852 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 61 851 - -
Gso6g2187 852 ProSiteProfiles PAN/Apple domain profile. 375 455 IPR003609 -
Gso6g2187 852 CDD B_lectin 58 178 IPR001480 -
Gso6g2187 852 ProSiteProfiles Bulb-type lectin domain profile. 52 172 IPR001480 -
Gso6g2187 852 SMART serkin_6 535 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2187 852 PIRSF SRK 27 852 IPR024171 GO:0004674
Gso6g2187 852 Pfam S-locus glycoprotein domain 237 353 IPR000858 GO:0048544
Gso6g2187 852 ProSiteProfiles EGF-like domain profile. 320 356 IPR000742 -
Gso6g2187 852 Gene3D Phosphorylase Kinase; domain 1 495 610 - -
Gso6g2187 852 CDD PAN_AP_plant 373 455 - -
Gso6g2187 852 Pfam PAN-like domain 375 440 IPR003609 -
Gso6g2187 852 Pfam D-mannose binding lectin 101 204 IPR001480 -
Gso6g2187 852 Gene3D Transferase(Phosphotransferase) domain 1 611 816 - -
Gso6g2187 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 101 209 IPR036426 -
Gso6g2187 852 CDD STKc_IRAK 541 806 - -
Gso6g2187 852 Gene3D - 48 175 IPR036426 -
Gso6g2187 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Gso6g2187 852 SMART ntp_6 375 454 IPR003609 -
Gso6g2187 852 SMART blect_4 58 178 IPR001480 -
Gso6g2187 852 ProSiteProfiles Protein kinase domain profile. 535 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2187 852 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 61 851 - -
Gso6g2187 852 SUPERFAMILY Protein kinase-like (PK-like) 516 806 IPR011009 -
Gso6g2187 852 Coils Coil 501 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2187 Gso-Chr6 41915481 41919179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2187 464 823 Receptor kinase-like Gene Family AT4G23190 53.297 3.99e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2187 PK_Tyr_Ser-Thr 4.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2187 - - gmx:100807748 1734.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1164 12 17603080 17607142 Gso6g2187 6 41915481 41919179 GST