Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2182 ATGGACATTTTCTCTGTCATGACGATGGTTGCTTGCATGCTTCCCTCTCTCAGAATTTCCGTAGCAAATGATTCTATTAACGTGTCCAAGTCCATGACTGATGGGGAGAGCTTGGTGTCAAAAGGTGGAAAGTTTGAACTAGGGTTTTTCAGCCCTGGTAATTCTCAGAAACGTTACTTGGGAATTTGGTACAAGAATGTCCCAAACCAGACAGTTGTTTGGGTTGCTAATAGGGAAAACCCCATCAATGATTCCTCAGGCATCTTAACACTCAACACCACAGGGAATCTTGTTCTCACCCAAAACAAGTCTCTTGTTTGGTACACAAACAACTCTCACAACCAAGCACAGAATCCGGTGGCAGTGCTCTTGGAAAGTGGCAATCTTGTCATAAGAAATGAGGGAGAAACAAACCCAGAAGCGTATTTGTGGCAAAGCTTTGACTATCCATCTGATACATTCCTGCCAGGAATGAAGTTGGGATGGAATCTCCGAACGGGTCATGAATGGAAACTAACAGCTTGGAAGAGTCCAGATGATCCATCCCCAGGAGACGTTTATCGGGTTTTCAAACTCTATAACTATCCTGAGCTTTATGTAATGAAAAAAACAAAAAAGTTATACCGATTTGGACCTTGGAATGGCTTATATTTTAGCGGAATGTCTGATCTACAGAACAACACCGTGCATAGCTTCTATTATGTCAGCAATAAAGACGAGATATACTACGCGTATAGCCTTGCAAATGATTCTGTCATCGTCAGATCTGTAACAGACCAAACTACAAGTACAGTTTATCGTTATAAATGGGTTGTGGGTGAACAAAATTGGAGGCTATCCAGATCCTTCCCTACAGAGTTTTGTGACACTTATAGCGTCTGCGGAGCCTACGGGAATTGCGTAAGTAGTACTCAACCTCAAGCCTGCAATTGTTTGAAAGGTTTCAGTCCAAATTCTCCACAAGCATGGAAATCTTCGTATTGGAGTGGCGGATGTGTACGCAATAAACCATTGATCTGCGAAGAAAAACTATCAGATGGGTTTGTCAAATTTAAAGGCCTGAAAGTTCCAGATACTACACATACTTGGTTGAATGAGAGTATTGGTCTAGAGGAATGTCGAGTGAAGTGCTTGAGTAATTGTTCTTGTATGGCCTTTGCTAATTCAGATATAAGAGGTGAAGGTAGTGGCTGTGTCATGTGGTTTGGAGATCTCATTGACATGAAACAACTTCAAACTGATGGCCAAGATCTATATATCAGGATGCATGCATCAGAGTTAGATAGGCACAAGAAGAACATGCCAGTAGTAGCTGCTTTCACCAGTGCTGCAATTTGTGGGGTTCTATTACTAAGTTCTTATTTTTTCTGCAGAAGCCGGAGGAGGAACAATGCTGCAACCAATTGTTGGAAGGACAAGAGTGAGAAGGATGACAACATGGATTTACAAGCATTTGATTTTCCATCCATCTCTAATGCCACAAATCAATTTTCAGAAAGTAACAAATTAGGACAAGGTGGTTTTGGACCAGTGTACAAGGGCATGTTACCAAATGGGCAAGAGATTGCAGTTAAGAGGCTTTCAAATATTTGTGGACAAGGATTGGACGAGTTCAAAAACGAAGTCATGTTAATTGCAAAACTTCAACACCGTAATCTAGTAACACTCGTTGGTTGTTCTATTCAGCAAGATGAGAAGTTGTTGATTTATGAATTCATGCCAAATAGAAGCTTGGACTACTTTATTTTTGATTCAGCAAGGCGTGCATTATTAGGATGGGCTAAACGACTTGAAATTATTGGTGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCTAAACTAAAGATCATTCACAGGGATCTCAAAACCAGTAATGTTCTACTTGATAGTAATATGAACCCAAAAATATCAGATTTTGGTATGGCTAGGACATTTGAGCTAGATCAAGATGAAGAAAATACGACTAGAATTATGGGAACATACGGTTATATGTCTCCTGAATATGCTGTACATGGATCTTTTTCAGTCAAATCTGATGTTTATAGCTTTGGTGTGATTATATTGGAGATAATCAGCGGGAGAAAGATCAAGGAATTTATTGACCCACATCATGACCTAAATCTTCTTGGGCATGTAGGTCTATAA 2151 0.4003 MDIFSVMTMVACMLPSLRISVANDSINVSKSMTDGESLVSKGGKFELGFFSPGNSQKRYLGIWYKNVPNQTVVWVANRENPINDSSGILTLNTTGNLVLTQNKSLVWYTNNSHNQAQNPVAVLLESGNLVIRNEGETNPEAYLWQSFDYPSDTFLPGMKLGWNLRTGHEWKLTAWKSPDDPSPGDVYRVFKLYNYPELYVMKKTKKLYRFGPWNGLYFSGMSDLQNNTVHSFYYVSNKDEIYYAYSLANDSVIVRSVTDQTTSTVYRYKWVVGEQNWRLSRSFPTEFCDTYSVCGAYGNCVSSTQPQACNCLKGFSPNSPQAWKSSYWSGGCVRNKPLICEEKLSDGFVKFKGLKVPDTTHTWLNESIGLEECRVKCLSNCSCMAFANSDIRGEGSGCVMWFGDLIDMKQLQTDGQDLYIRMHASELDRHKKNMPVVAAFTSAAICGVLLLSSYFFCRSRRRNNAATNCWKDKSEKDDNMDLQAFDFPSISNATNQFSESNKLGQGGFGPVYKGMLPNGQEIAVKRLSNICGQGLDEFKNEVMLIAKLQHRNLVTLVGCSIQQDEKLLIYEFMPNRSLDYFIFDSARRALLGWAKRLEIIGGIARGLLYLHQDSKLKIIHRDLKTSNVLLDSNMNPKISDFGMARTFELDQDEENTTRIMGTYGYMSPEYAVHGSFSVKSDVYSFGVIILEIISGRKIKEFIDPHHDLNLLGHVGL* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2182 716 ProSiteProfiles PAN/Apple domain profile. 340 424 IPR003609 -
Gso6g2182 716 Gene3D Hepatocyte Growth Factor 340 424 - -
Gso6g2182 716 SMART serkin_6 497 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2182 716 Pfam Protein tyrosine and serine/threonine kinase 500 695 IPR001245 GO:0004672|GO:0006468
Gso6g2182 716 Pfam D-mannose binding lectin 71 176 IPR001480 -
Gso6g2182 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Gso6g2182 716 Gene3D Transferase(Phosphotransferase) domain 1 573 713 - -
Gso6g2182 716 ProSiteProfiles Protein kinase domain profile. 497 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2182 716 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Gso6g2182 716 SMART blect_4 29 150 IPR001480 -
Gso6g2182 716 Gene3D Phosphorylase Kinase; domain 1 458 572 - -
Gso6g2182 716 CDD B_lectin 29 150 IPR001480 -
Gso6g2182 716 SUPERFAMILY Protein kinase-like (PK-like) 480 705 IPR011009 -
Gso6g2182 716 PANTHER - 10 714 - -
Gso6g2182 716 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Gso6g2182 716 Pfam PAN-like domain 342 408 IPR003609 -
Gso6g2182 716 Gene3D - 18 147 IPR036426 -
Gso6g2182 716 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 10 714 - -
Gso6g2182 716 SMART ntp_6 343 422 IPR003609 -
Gso6g2182 716 PIRSF SRK 1 715 IPR024171 GO:0004674
Gso6g2182 716 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Gso6g2182 716 CDD PAN_AP_plant 337 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2182 Gso-Chr6 41850974 41855701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2182 433 708 Receptor kinase-like Gene Family AT4G23230 57.914 6.32e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2182 PK_Tyr_Ser-Thr 5.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2182 - - gmx:100804557 1461.43