Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2181 ATGCACATCCTTTCTTTCATAATTTTATTTACATGCATACTTGTCCCCTTTCCCAAAATTTCCGTAGCAAATGATTCTATCAACTTGCCACAGTCTATGAGAGACGGCGATACCTTGGTATCAAAAACTAGAAAGTTTGAACTTGGGTTTTTCAGCCCGGGTAGTTCGCAAAAACGTTATCTGGGAATTTGGTACAAGAATATCCCAATTCGGACAGTGGTTTGGGTTGCTAATAGGGAAAACCCCATCAATGATTCCTCAGGCATCTTAACACTCAACACCACAGGGAATCTTGTTCTCACCCAAAACAAGTCTCTTGTTTGGTACACAAACAACTCTCACAAACAAGCACAGAATCCAGTGGCAGTGCTCTTGGACAGTGGCAATCTTGTGATAAGAAATGACGGAGAAACAAACCCAGAAGCTTATTTGTGGCAAAGCTTTGACTATCCATCTGATACACTCTTGCCAGGGATGAAATTGGGATGGGACCTTCGAACCGGTCTGGACCGGAGACTAACAGCTTGGAAAAGTCCAGATGATCCATCCCCGGGAGACGTTTACCGGGATCTCGAACTCTATAGCTATCCTGAGTTCTATATAATGAAGGGAACCAAAAAGGTATACCGGTTTGGACCTTGGAATGGCCTATATTTTAGTGGAGTTCCAGATCTTCGGAATAACACCATATTTGGCTTCAATTTTTTCAGCAATAAGGAGGAGAGTTACTACATCTTTAGCCCCACAAATGATCTTGTCATGTCCAGAATTGTAATGAACGAATCGACTACAATCTATCGCTATGTATGGGTGGAGGATGATCAAAATTGGAGGATATACACGTCACTTCCAAAAGACTTCTGTGACACTTATGGTCTCTGTGGAGTCTATGGCAATTGCATGACCTCACAGACACAAGTGTGCCAATGTTTGAAAGGGTTTAGTCCAAAGTCACCAGAAGCATGGGTTTCATCTGGCTGGAGTCAAGGATGTGTCCGCAATAAACCATTAAGCTGCAAAGACAAACTCACAGATGGGTTTGTCAAATATGAAGGCCTCAAGGTTCCAGATACTAGACATACTTGGTTGGATGAGAGTATTGGTCTAGAGGAATGCAAAGTTATCTGTTTGAATAATTGTTCTTGCATGGCCTATACTAATTCAGACATAAGAGGTGCAGGTAGTGGCTGTGTCATGTGGTTTGGGGATCTAATTGACATCAAACAGCTTCAAACTGCTGGTCAAGATCTATATATCAGGATGCCTGCTTCAGAGTTAGAATCTGTATATAGGCACAAGAAGAAGACCACAACGATAGCTGCTTCTACCACTGCTGCAATCTGTGGGGTTCTTTTACTGAGTAGTTATTTTATTTGCAGAATTCGGAGGAACAATGCTGGAAAATCATTAACAGAATATGACAGTGAAAAAGATATGGATGATCTGGACATCCAACTGTTTGATCTACCGACAATTACAACTGCCACTAATGACTTCTCAATGGAGAATAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATATTAGTTGACGGGCAAGAAATTGCTGTAAAGACTCTATCAAGGAGCTCATGGCAAGGAGTGACAGAGTTCATAAATGAAGTAAAATTAATTGCAAAACTTCAGCATCGGAATCTTGTAAAACTCCTTGGTTGTTGCATTCAAGGACAAGAGAAAATGCTAATTTATGAGTACATGGCAAACGGCAGCCTGGACTCCTTCATTTTTGATGATAAAAAAAGAAAATTGCTAAAGTGGCCTCAACAATTCCACATAATCTGTGGAATTGCAAGGGGGCTTATGTATCTTCATCAAGATTCCCGACTGAGGATTATTCATAGAGATCTGAAAGCAAGTAATGTTCTACTCGATGAAAATTCTAGTCCAAAAATATCAGATTTTGGAATGGCCAGAACTTTTGGTGGAGACCAATTTGAAGGAAACACAAGTAGAGTAGTTGGGACCTGTGGGTATATGGCACCGGAGTATGCTGTTGATGGGTCATTTTCTGTGAAATCTGATGTCTTTAGCTTTGGCATTTTAGTGTTGGAGATTGTATGTGGCAAGAGAAATAAAGGACTTTATCAGACAGATAAGAGTCTTAACCTCGTTGGTCATGCATGGACATTATGGAAAGAGGGAAGGGCACTAGATTTGATTGATGACTCAAACATGAAGGAGTCGTGCGTTATATCCGAAGTATTACGTTGCATCCATGTTGGCCTTTTGTGTGTGCAGCAGTACCCAGAAGATAGGCCTACAATGGCATCTGTGATTCTGATGTTGGAGAGTCACATGGAATTGGTTGAGCCTAAAGAACATGGCTTCATTTCGAGAAATTTTTTAGGTGAAGGAGATTTACGCTCAAATCGGAAAGACACAAGTTCAAGCAACGATGTGACAATTACCTTGTTAGAAGCGCGATAA 2454 0.4099 MHILSFIILFTCILVPFPKISVANDSINLPQSMRDGDTLVSKTRKFELGFFSPGSSQKRYLGIWYKNIPIRTVVWVANRENPINDSSGILTLNTTGNLVLTQNKSLVWYTNNSHKQAQNPVAVLLDSGNLVIRNDGETNPEAYLWQSFDYPSDTLLPGMKLGWDLRTGLDRRLTAWKSPDDPSPGDVYRDLELYSYPEFYIMKGTKKVYRFGPWNGLYFSGVPDLRNNTIFGFNFFSNKEESYYIFSPTNDLVMSRIVMNESTTIYRYVWVEDDQNWRIYTSLPKDFCDTYGLCGVYGNCMTSQTQVCQCLKGFSPKSPEAWVSSGWSQGCVRNKPLSCKDKLTDGFVKYEGLKVPDTRHTWLDESIGLEECKVICLNNCSCMAYTNSDIRGAGSGCVMWFGDLIDIKQLQTAGQDLYIRMPASELESVYRHKKKTTTIAASTTAAICGVLLLSSYFICRIRRNNAGKSLTEYDSEKDMDDLDIQLFDLPTITTATNDFSMENKIGEGGFGPVYKGILVDGQEIAVKTLSRSSWQGVTEFINEVKLIAKLQHRNLVKLLGCCIQGQEKMLIYEYMANGSLDSFIFDDKKRKLLKWPQQFHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDENSSPKISDFGMARTFGGDQFEGNTSRVVGTCGYMAPEYAVDGSFSVKSDVFSFGILVLEIVCGKRNKGLYQTDKSLNLVGHAWTLWKEGRALDLIDDSNMKESCVISEVLRCIHVGLLCVQQYPEDRPTMASVILMLESHMELVEPKEHGFISRNFLGEGDLRSNRKDTSSSNDVTITLLEAR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2181 817 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Gso6g2181 817 CDD STKc_IRAK 505 772 - -
Gso6g2181 817 SUPERFAMILY Protein kinase-like (PK-like) 484 772 IPR011009 -
Gso6g2181 817 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gso6g2181 817 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Gso6g2181 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Gso6g2181 817 Gene3D Transferase(Phosphotransferase) domain 1 575 785 - -
Gso6g2181 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 814 - -
Gso6g2181 817 SMART serkin_6 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2181 817 CDD B_lectin 35 151 IPR001480 -
Gso6g2181 817 CDD PAN_AP_plant 336 422 - -
Gso6g2181 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Gso6g2181 817 Gene3D Phosphorylase Kinase; domain 1 473 574 - -
Gso6g2181 817 Gene3D - 19 148 IPR036426 -
Gso6g2181 817 PANTHER - 23 814 - -
Gso6g2181 817 SMART blect_4 30 151 IPR001480 -
Gso6g2181 817 ProSiteProfiles Protein kinase domain profile. 499 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2181 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Gso6g2181 817 Gene3D Hepatocyte Growth Factor 339 419 - -
Gso6g2181 817 Pfam Protein tyrosine and serine/threonine kinase 500 768 IPR001245 GO:0004672|GO:0006468
Gso6g2181 817 Pfam PAN-like domain 341 407 IPR003609 -
Gso6g2181 817 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gso6g2181 817 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2181 Gso-Chr6 41823110 41826997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2181 476 811 Receptor kinase-like Gene Family AT4G23150 54.896 4.70e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2181 PK_Tyr_Ser-Thr 3.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2181 - - gmx:100802962 1640.55