Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2179 ATGGAGATTCTTTCTTTCATGATTATATTTGCATGCATATTTGTTCCCTCTCTCAAAATTTCATTAGCGATTGATTCTATCAATCTGCTCGAGTCTATGAGAGATGGCGAGACCTTGGTATCAAAAGGTGGAAATTTTGAACTTGGGTTTTTCAGCCCAGGTAGTTCCCAGAAACGTTATCTGGGCATTTGGTACAAGAATATCCCAATTCAAACAGTGGTTTGGGTTGCTAATGGGGCCAACCCCATCAATGATTCTTCAGGCATCTTAACACTGAACAACACAGGCAATCTTGTTCTCAGACAAAAGTCAACTCTTGTTTGGTACACCAACAACTCTCACAAACAAGCACAGAATCCTGTGGTAGCGCTCTTGGACAGTGGAAATCTTGTGATAAAAAACGAGAAAGAAACAGACCCAGAAGCTTATTTGTGGCAAAGTTTTGACTATCCATCAGATAAACTCTTGCCAGGCATGAAGTTGGGATGGGACCTTCGAACTGATCTCGATCGGAGATATACTGCTTGGAAGAGTCCAGATGATCCATCCCCAGGTGATGTTTATCGTGCTTTGGTACTCCATAACTATCCTGAGGTTTATATGATGAAGGGAACACAAAAGTTGTTCCGGTATGGACCTTGGAATGGCCTATACTTTAGTGGACTACCAGATCTATCGAATAACACGCTTTTTAACTTGCACTATGTTAGCAATAAAGATGAAATCTACTACACCTATACCCTCCTTAATGATTCTGTCATCACCATAACTATAACAAACCAAACAGGTCATATTCATCGCTATGTATGGGATGAAAATGGTAAAACGTGGAGACCATTTAGATCCTACCCGAAAGACGTTTGCGACCCTTATAACCGCTGTGGACCCAACGGGAACTGCGTAACTACTCAGACACAAGCATGCCAATGTTTAAAAGGTTTCAGTCCAAAGTCACCACAAGCATGGTTCTCATCGTCGGATTGGACTGGAGGGTGTGTCCGCAATAAAGGGTTAAGCTGCAACGGCACAGACAAAGATAAGTTTGTCAAATTTAAATCTCTCAAAGTTCCAGATACTACGAATACTTTGGTGGATGAGAGTATTGGTCTAGAGGAATGCAGAGTCAAGTGCTTGAATAATTGTTCTTGTATGGCCTTCACTAATTCAGACATAAATGGTGAAGGTAGTGGTTGTGTCATGTGGTTTCATGATCTCTTTGACATGAGACAGTTTGAAAGTGTTGGCCAAGATCTATATATCAGAATGGCTGCTTCAGAGTCAGACTCTCAAGAACCAGTATCAAGGCACAAGAACAACACGCCAAAGATAGTTGCTTCGTCCATTGCTGCAATTTGTGGGGTTCTTTTTCTAAGTACTTATTTTATTTGCAGAATCCGAAGGAACAGAAGCCCAAGGAACAGCGCTGCAAATTTATTACCAGAAGATAACAGTAAAAATGATTTGGATGATTTGGAGGTCCAATTGTTTGATCTACTGACAATTGCAACTGCCACTAATGATTTCTCCACAGAAAATAAGATCGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGAATATTAATGGATGGGCGAGAAATTGCTGTAAAGACTCTATCAAAGAGCACATGGCAAGGAGTTGCAGAGTTCATAAATGAAGTAAATTTGATTGCAAAACTTCAACATCGGAATCTTGTAAAATTTCTTGGTTGTTGCATTCAAAGACAGGAAAGAATGTTAATTTATGAGTACATGCCAAACGGAAGCCTAGACTCCTTAATTTTTGATGATAAAAGAAGCAAATTGCTAGAGTGGCCTCAACGCTTCAACATAATTTGTGGAATTGCAAGGGGACTTATGTATATTCATCAAGATTCCCGATTGAGAATTATCCATAGAGATCTCAAGCCAAGTAACATCCTACTTGACGAAAATTTGAGTCCAAAAATATCAGATTTTGGAGTGGCCAGAACTTTTGGAGGAGACGAATCTGAAGGAATGACAAGAAGAGTAGTAGGAACCTATGGGTATATGGCACCGGAGTATGCTGTTGATGGGTCATTTTCGGTGAAATCCGATGTCTTTAGCTTTGGCATTTTAGCGTTGGAGATTGTATCTGGGACGAGAAACAAAGGACTTTATCAAACGGATAAGAGTCATAACCTTGTTGGTCATGCATGGACATTATGGAAAGCGGGCAGGGAATTAGATTTGATTGACTCAAACATGAAGTTGTCGTCATGCGTTATATCAGAAGTACAACGTTGCATCCATGTTAGTCTTTTGTGTGTGCAGCAGTTCCCAGATGATAGACCTCCAATGAAGTCTGTGATTCCAATGTTGGAGGGTCACATGGAAATGGTTGAGCCTAAAGAACATGGTTTTATTTCGGTAAATGTTTTAGGTGAATTAGATTTACACTCGAATCCGCAAAACACGAGTTCATCAAATTATGTGACGATTACCATGTTAGAAGGTCGATGA 2481 0.4019 MEILSFMIIFACIFVPSLKISLAIDSINLLESMRDGETLVSKGGNFELGFFSPGSSQKRYLGIWYKNIPIQTVVWVANGANPINDSSGILTLNNTGNLVLRQKSTLVWYTNNSHKQAQNPVVALLDSGNLVIKNEKETDPEAYLWQSFDYPSDKLLPGMKLGWDLRTDLDRRYTAWKSPDDPSPGDVYRALVLHNYPEVYMMKGTQKLFRYGPWNGLYFSGLPDLSNNTLFNLHYVSNKDEIYYTYTLLNDSVITITITNQTGHIHRYVWDENGKTWRPFRSYPKDVCDPYNRCGPNGNCVTTQTQACQCLKGFSPKSPQAWFSSSDWTGGCVRNKGLSCNGTDKDKFVKFKSLKVPDTTNTLVDESIGLEECRVKCLNNCSCMAFTNSDINGEGSGCVMWFHDLFDMRQFESVGQDLYIRMAASESDSQEPVSRHKNNTPKIVASSIAAICGVLFLSTYFICRIRRNRSPRNSAANLLPEDNSKNDLDDLEVQLFDLLTIATATNDFSTENKIGEGGFGPVYKGILMDGREIAVKTLSKSTWQGVAEFINEVNLIAKLQHRNLVKFLGCCIQRQERMLIYEYMPNGSLDSLIFDDKRSKLLEWPQRFNIICGIARGLMYIHQDSRLRIIHRDLKPSNILLDENLSPKISDFGVARTFGGDESEGMTRRVVGTYGYMAPEYAVDGSFSVKSDVFSFGILALEIVSGTRNKGLYQTDKSHNLVGHAWTLWKAGRELDLIDSNMKLSSCVISEVQRCIHVSLLCVQQFPDDRPPMKSVIPMLEGHMEMVEPKEHGFISVNVLGELDLHSNPQNTSSSNYVTITMLEGR* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2179 826 Gene3D Transferase(Phosphotransferase) domain 1 584 795 - -
Gso6g2179 826 Gene3D Phosphorylase Kinase; domain 1 482 583 - -
Gso6g2179 826 CDD PAN_AP_plant 338 423 - -
Gso6g2179 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Gso6g2179 826 Pfam Protein kinase domain 509 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2179 826 Pfam PAN-like domain 340 408 IPR003609 -
Gso6g2179 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 825 - -
Gso6g2179 826 SUPERFAMILY Protein kinase-like (PK-like) 492 781 IPR011009 -
Gso6g2179 826 SMART serkin_6 508 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2179 826 Pfam D-mannose binding lectin 72 177 IPR001480 -
Gso6g2179 826 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Gso6g2179 826 SMART blect_4 30 151 IPR001480 -
Gso6g2179 826 Gene3D - 20 148 IPR036426 -
Gso6g2179 826 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Gso6g2179 826 CDD B_lectin 31 151 IPR001480 -
Gso6g2179 826 ProSiteProfiles Protein kinase domain profile. 508 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2179 826 CDD STKc_IRAK 514 782 - -
Gso6g2179 826 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Gso6g2179 826 SMART ntp_6 343 422 IPR003609 -
Gso6g2179 826 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Gso6g2179 826 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 31 825 - -
Gso6g2179 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Gso6g2179 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2179 Gso-Chr6 41771520 41776621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2179 448 794 Receptor kinase-like Gene Family AT4G23230 51.149 2.69e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2179 Pkinase 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2179 - - gmx:100802443 1615.13