Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2178 ATGTCCAATAACAGAGAGCTACTGTACTCAATGAAGATTCTTTCTTTCATGATTTTGGTTATTTGCATAGTTGTTCCCTCTCTCAGAATTTGCGTAGCAGATGATTCTATAAACGTGCTCCAGTCTATGAGTGATGGGGAGAGATTGGTGTCAAAAGGTGGAAATTTTGAACTTGGGTTTTTCAGCCCAGGTAGTTCCCAGAAACGTTATGTGGGAATTTGGTACAAGAATATCCCAACTCAGACAGTGGTTTGGGTTGCTAATGGGGCAAACCCCATCAATGATTCCTCAGGCATCTTAACACTCAACACCACAGGCAATCTTGTTCTCACACAAAATGGTTCTATTGTGTGGTACACCAACAACTCTCACAAACAAGCACAGAATCCGGTGGTGGAGCTCTTGGACAGTGGCAATCTTGTCATAAGAAATGATGGAGAATCAAACCCAGAAGCGTATTTGTGGCAAAGTTTTGACTATCCCTCTCATGCACTCTTGCCAGGGATGAAGTTTGGAAGAGACCTCCGAACAGGTCTTGAACGGAGATATACTGCTTGGAAGAGTCCAGAGGATCCATCACCAGGAGATGTTTATGGGGTTTTGAAACCCTATAATTATCCTGAGTTTTATATGATGAAGGGAGAAAAAAAGTTATTAAGGCAGGGACCGTGGAACGGCCTATATTTTAGTGGATTTCCAGATCTACAGAATAACACCATTTTTGGCATCAATTTCGTCAGCAATAAGGATGAGATTTACTACACCTTTAGCCTTGTAAAAAGTTCTGTCGTTACCATAAATGTAATAAACCAAACAGGTAGAACTTATCGCTATGTGTGGGTAGAGGGTGATCAAAATTGGAGGATATACATTTCACAACCGAAAGACTTTTGTGATACTTATGGTCTTTGTGGAGCCTATGGGAGTTGCATGATTTCACAGACACAAGTGTGCCAATGTTTGAAAGGGTTTAGTCCAAAGTCACCACAAGCATGGGCTTCATCTGACTGGACTCAAGGATGTGTCCGCAATAACCCATTGAGTTGCCATGGCGAAGACAAAGATGGATTTGTCAAATTTGAAGGTTTCAAGGTTCCAGATTCAACACATACTTGGGTGGATGAGAGTATTGGTCTAGAGGAATGCAGAGTCAAGTGTTTGAGTAATTGTTCTTGTATGGCCTATACTAATTCAGACATAAGAGGTGAAGGTAGTGGCTGTGTCATGTGGTTTGGAGATCTCATTGATATGAAACAGCTTCAAACTGGTGGACAAGATCTATATATCAGGATGCCCGCTTCAGAATTAGAGAAAGACAAGACTGAGAAGGATGGCGTTAATTTAACAACATTTGATTTTTCATCGATCTCCTATGCCACAAATCACTTTTCAGAAAATAACAAATTGGGACAAGGTGGCTTTGGATCAGTGTACAAGGGCATATTACTAGACGGGCAAGAGATTGCAGTTAAGAGGCTTTCTGAAACTTCTAGACAAGGTTTAAATGAGTTCCAAAATGAAGTCAAGTTGATTGCAAAACTTCAACACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTCAGAAAGATGAGAAGTTGTTGATTTATGAATTGATGCCCAACAGAAGCTTGGACCACTTTATTTTTGATTCAACAAGGCGTACATTATTAGATTGGGTTAAGAGATTTGAAATTATTGATGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCTAGATTAAAGATCATACATAGGGATCTCAAAACTAGCAATGTTCTTCTTGATAGTAATATGAACCCAAAAATATCTGATTTTGGTATGGCTAGGACATTTGGGCTAGATCAAGATGAAGCAAATACAAATAGAATAATGGGAACATATGGTTATATGCCTCCTGAATATGCTGTACATGGATTTTTCTCAGTCAAATCAGATGTGTTCAGTTTTGGTGTAATTGTACTGGAGATTATAAGTGGGAGAAAGATCAGGGGATTTTGTGACCCATACCATAACTTAAATCTTCTTGGGCATGCATGGAGACTATGGACTGAGAAAAGGTCAATGGAATTCATAGATGACTTATTGGACAATTCAGCCAGATTATCTGAAATAATAAGATATATTCATATTGGTTTGTTATGCGTGCAACAAAGACCAGAGGATAGACCAAACATGTCATCAGTAATTTTAATGTTGAATGGTGAAAAGTTATTGCCCGAACCAAGTCAACCAGGGTTCTACACAGGAAAAGTTCACTCAACCATGACAGAATCTTCTCCAAGAAATACTGATGCGTATTCGTTCAATGAAATCTCTAACTCATTGTTGGAGGCAAGATAA 2346 0.3909 MSNNRELLYSMKILSFMILVICIVVPSLRICVADDSINVLQSMSDGERLVSKGGNFELGFFSPGSSQKRYVGIWYKNIPTQTVVWVANGANPINDSSGILTLNTTGNLVLTQNGSIVWYTNNSHKQAQNPVVELLDSGNLVIRNDGESNPEAYLWQSFDYPSHALLPGMKFGRDLRTGLERRYTAWKSPEDPSPGDVYGVLKPYNYPEFYMMKGEKKLLRQGPWNGLYFSGFPDLQNNTIFGINFVSNKDEIYYTFSLVKSSVVTINVINQTGRTYRYVWVEGDQNWRIYISQPKDFCDTYGLCGAYGSCMISQTQVCQCLKGFSPKSPQAWASSDWTQGCVRNNPLSCHGEDKDGFVKFEGFKVPDSTHTWVDESIGLEECRVKCLSNCSCMAYTNSDIRGEGSGCVMWFGDLIDMKQLQTGGQDLYIRMPASELEKDKTEKDGVNLTTFDFSSISYATNHFSENNKLGQGGFGSVYKGILLDGQEIAVKRLSETSRQGLNEFQNEVKLIAKLQHRNLVKLLGCSIQKDEKLLIYELMPNRSLDHFIFDSTRRTLLDWVKRFEIIDGIARGLLYLHQDSRLKIIHRDLKTSNVLLDSNMNPKISDFGMARTFGLDQDEANTNRIMGTYGYMPPEYAVHGFFSVKSDVFSFGVIVLEIISGRKIRGFCDPYHNLNLLGHAWRLWTEKRSMEFIDDLLDNSARLSEIIRYIHIGLLCVQQRPEDRPNMSSVILMLNGEKLLPEPSQPGFYTGKVHSTMTESSPRNTDAYSFNEISNSLLEAR* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2178 781 SMART ntp_6 352 431 IPR003609 -
Gso6g2178 781 SMART serkin_6 463 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2178 781 CDD PAN_AP_plant 346 432 - -
Gso6g2178 781 Pfam Protein tyrosine and serine/threonine kinase 466 731 IPR001245 GO:0004672|GO:0006468
Gso6g2178 781 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 192 IPR036426 -
Gso6g2178 781 Gene3D Phosphorylase Kinase; domain 1 429 538 - -
Gso6g2178 781 ProSiteProfiles PAN/Apple domain profile. 349 433 IPR003609 -
Gso6g2178 781 ProSiteProfiles Bulb-type lectin domain profile. 34 155 IPR001480 -
Gso6g2178 781 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Gso6g2178 781 CDD B_lectin 41 161 IPR001480 -
Gso6g2178 781 SUPERFAMILY Protein kinase-like (PK-like) 447 734 IPR011009 -
Gso6g2178 781 Gene3D - 29 158 IPR036426 -
Gso6g2178 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Gso6g2178 781 SMART blect_4 40 161 IPR001480 -
Gso6g2178 781 Gene3D Hepatocyte Growth Factor 349 428 - -
Gso6g2178 781 PANTHER - 21 443 - -
Gso6g2178 781 PANTHER - 441 780 - -
Gso6g2178 781 CDD STKc_IRAK 469 736 - -
Gso6g2178 781 Pfam D-mannose binding lectin 82 187 IPR001480 -
Gso6g2178 781 PANTHER - 441 780 - -
Gso6g2178 781 PANTHER - 21 443 - -
Gso6g2178 781 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2178 781 Pfam PAN-like domain 349 417 IPR003609 -
Gso6g2178 781 Gene3D Transferase(Phosphotransferase) domain 1 539 740 - -
Gso6g2178 781 Pfam S-locus glycoprotein domain 220 328 IPR000858 GO:0048544
Gso6g2178 781 PIRSF SRK 435 781 IPR024171 GO:0004674
Gso6g2178 781 PIRSF SRK 6 446 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2178 Gso-Chr6 41747291 41750842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2178 433 773 Receptor kinase-like Gene Family AT4G23140 54.622 4.21e-128 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2178 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2178 - - gmx:100801916 1577.38