Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2171 ATGGCTTCTACTTCTAATGCCATCATCCAATGCACCTCTTCTTCTTCTTCGTTTCAGTATGACGTGTTTGTGAGCTTCCGCGGTGAAGACACACGAAACAGCTTCACAGGTTTTCTTTTTGAAGCTCTGAAAAAACAAGGCATCGAGGCCTTCAAAGATGATAAAGATATCAGGAAAGGCGAATCCATAGCACCAGAGCTAATACGAGCCATTGAAGGGTCTCATGTTTTCGTTGTTGTCTTTTCCAAGGACTATGCTTCCTCAACTTGGTGCCTGCGTGAACTAGCACATATCTGGAATTGCATTCAAACATCACCCAGACATCTTCTGCCTATTTTTTATGATGTTGATCCATCACAAGTGCGAAAACAGAGTGGAGACTATGAGAAAGCCTTTTCCCAACACCAACAAAGTTCCAGGTTCCAAGAGAAGGAAATTAAAACATGGAGAGAAGTTCTGAACCATGTAGGCAATCTCTCTGGTTGGGATATCAGAAATAAGCAACAACATGCAGTGATTGAAGAAATTGTTCAGCAGATAAAAACTATCTTGGGTTGCAAATTTTCTACTCTTCCATATGATAATCTAGTTGGGATGGAATCTCATTTTGCTACATTATCAAAGCTAATATGTCTGGGGCCGGTTAATGATGTTCCAGTTGTTGGAATTACTGGGATGGGTGGAATAGGAAAATCTACTCTTGGTCGATCTTTATATGAAAGAATCTCTCATCGATTTAATTCTTGTTGTTATATTGATGACGTAAGCAAACTTTATCGACTTGAAGGTACATTAGGTGTACAAAAGCAATTACTTTCTCAATCTCTAAATGAAAGAAATCTAGAGATTTGCAATGTATCTGATGGAACACTTCTGGCATGGAAGAGGCTACTCAATGTAAAGGCACTTATAGTTCTTGACAATGTTGATCAAGATAAACAGCTTGATATATTTACAGGGGGTAGAAATGATCTGTTACGTAAATGCCTCGATAAAGGGAGCATAGTCATTATAATTTCTAGGGATCAACAAATATTGAAGGCACATGGGGTAGATGTTATTTACCAAGTGGAGCCATTGAATGACAATGATGCTCTTCGATTGTTTTGCAAAAAAGCATTTAAAAATAATTATATTACGAGTGATTTTATAAAGTTGACTTCTGATGTATTATCACATTGTCAAGGTCTTCCCTTAGCAATTGAAGTAATAGGCTCATCTTTGTTTGATAAAGATGTCTTTCATTGGAGGAGTGCATTGGTTTCGTTAAGAGAAAATAAAAGTAAAAATATTATGGATGTGTTGCGAATAAGTTTTGATCAATTAGAGAATACACACAAGGAAATATTTCTAGATATTGCATGTTTCTTCAAACGTAGAGATGTGGAATATGTGAAGGAAGTTCTAGATTTTCGTGAATTTAATCCCGAATATGGCCTACAAGTTCTCGTTGATAAATCACTTATAACCATGGATGAGGAGAAAATTGGAATGCATGACTTGTTGTGCGATTTGGGCAAGTATATTGTTAGAGAAAAATCACCTAGGAAGCCATGGGAGTGGAGCAGATTGTGGGATTTCAAAGATTTTCATAAAGTTATATTAGATAATAAGGTAGCAGAAAATGTTGAGGTCATAATAATTGAAGATTCATATGACATTCATCGAACAAGAACAATGAGGGTCGATGCTCTATCAACAATGAGTAGCCTTAAGTTTCTCAAATTTGGATATGGGAACGTTGGCTTTGAAATCAATTATTCAGGAACACTTGCTAAGCTTTCCAATGAATTAGGATATCTTAGTTGGAAAAAGTATCCTTTTGAATGTTTGCCACCAAGTTTTCAGCCAGACAAACTTGTTGAGTTGACTCTACGTAAAAGCAACATCAAACAACTTTGGGAAGACACAAAGCCTCTACCCAATTTGAGGCGTTTGGATCTCTCTGGCTCCAAAAATCTAATTAAAATGCCATATATTGGAGATGCCCTATATCTTGAGAATCTTAGTCTTAAAGGATGTATACAACTCGAAGAGATCGGCCTGTCCATTGTTCTTTCACCAAAGCTTACTGATCTGAATTTGAGAAATTGCAAAAGTCTTATCAAGTTGCCACGGTTTGGAGAGGACCTAATTCTTGAATTCCTAGATCTCGAAGGATGTCAAAAACTCAGACACATTGATCCATCCATCGGTCTTCTAAAAAAGCTCAAATATTTGAATTTGAAAAACTGCAAAAATCTAGTAAGCTTACCCAATAGCATACTAGGCCTCAATTCTCTTGTATGGCTGTACCTCTCTGGCTGTTCAAAACTGTACCACACCGAGTTATTATATGAACTAAGGGATGCAGAGCAATTGAAGAAGATTGATACAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCTACTCCATAGAACATAAAAAATCAGTTAGTTGCTTAATGCCTTTCTCCCCAATATTTCCATGTATGCGTCAACTTGATCTAAGTTTCTGTAATTTAGTTGAAATCCCTGATGCTATTGGAATTATGAGTCGCTTTGAAAGCCTAGATTTAAGTGGTAACAATTTTGCTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGGTCTGTTTAAAGTTACAACATTGCAAGCAGTTGAAATCTTTGCCTGAGCTCCCTTCACGGATTAACAATTTTGATGGACTAAGTCAAGCAGGATTATACATTTTTAACTGCCCAGAATTAGTTGATAGGGAACGCTGCACTGACATGGCTTTTTCATGGATGATGCAATTGTGTTCTCAGGTGAGATTGTTCTCTTTATGCTATTACCATTTTGGAGGTGTTAGTCCAGGAAGTGAAATACCAAGGTGGTTCAATAATGAGAATGAGGGAAATTGTATAAGCTTAGACGCATCTCCTGTTATGCATGACGATAATTGGATTGGCGTTGCGTTTTGTGCAATATTCGTCGTACCTCATGAAACACTCTCAGCAATGAGTTTTTCAGAGACAGAACCGTCATGGCCTTTGTTTGGTGATATTCCAGTGGATTTTTATGAAGATGTAGATCTAGAACTTGTTTTAGACAAATCAGATCACATGTGGCTATTCTTTGTGGATCGATATGACTCCATTCACAAATTACATCTCAAGGACAAATATCTTGGCAGATTGGTTTCGAGATATGATAGTGTGTTGAAAGAGTCATATGCGAAGGTGAAGAAATACGGATATCGCTGGGTATATAAAGGGGATATAGAAGGGGCCATCAAATCCGTTGTCTAG 3276 0.3739 MASTSNAIIQCTSSSSSFQYDVFVSFRGEDTRNSFTGFLFEALKKQGIEAFKDDKDIRKGESIAPELIRAIEGSHVFVVVFSKDYASSTWCLRELAHIWNCIQTSPRHLLPIFYDVDPSQVRKQSGDYEKAFSQHQQSSRFQEKEIKTWREVLNHVGNLSGWDIRNKQQHAVIEEIVQQIKTILGCKFSTLPYDNLVGMESHFATLSKLICLGPVNDVPVVGITGMGGIGKSTLGRSLYERISHRFNSCCYIDDVSKLYRLEGTLGVQKQLLSQSLNERNLEICNVSDGTLLAWKRLLNVKALIVLDNVDQDKQLDIFTGGRNDLLRKCLDKGSIVIIISRDQQILKAHGVDVIYQVEPLNDNDALRLFCKKAFKNNYITSDFIKLTSDVLSHCQGLPLAIEVIGSSLFDKDVFHWRSALVSLRENKSKNIMDVLRISFDQLENTHKEIFLDIACFFKRRDVEYVKEVLDFREFNPEYGLQVLVDKSLITMDEEKIGMHDLLCDLGKYIVREKSPRKPWEWSRLWDFKDFHKVILDNKVAENVEVIIIEDSYDIHRTRTMRVDALSTMSSLKFLKFGYGNVGFEINYSGTLAKLSNELGYLSWKKYPFECLPPSFQPDKLVELTLRKSNIKQLWEDTKPLPNLRRLDLSGSKNLIKMPYIGDALYLENLSLKGCIQLEEIGLSIVLSPKLTDLNLRNCKSLIKLPRFGEDLILEFLDLEGCQKLRHIDPSIGLLKKLKYLNLKNCKNLVSLPNSILGLNSLVWLYLSGCSKLYHTELLYELRDAEQLKKIDTDGAPIHFQSTSSYSIEHKKSVSCLMPFSPIFPCMRQLDLSFCNLVEIPDAIGIMSRFESLDLSGNNFATLPNLKKLSKLVCLKLQHCKQLKSLPELPSRINNFDGLSQAGLYIFNCPELVDRERCTDMAFSWMMQLCSQVRLFSLCYYHFGGVSPGSEIPRWFNNENEGNCISLDASPVMHDDNWIGVAFCAIFVVPHETLSAMSFSETEPSWPLFGDIPVDFYEDVDLELVLDKSDHMWLFFVDRYDSIHKLHLKDKYLGRLVSRYDSVLKESYAKVKKYGYRWVYKGDIEGAIKSVV* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2171 1091 Gene3D Ribonuclease Inhibitor 800 966 IPR032675 -
Gso6g2171 1091 Gene3D Ribonuclease Inhibitor 712 793 IPR032675 -
Gso6g2171 1091 Gene3D Ribonuclease Inhibitor 559 711 IPR032675 -
Gso6g2171 1091 ProSiteProfiles Leucine-rich repeat profile. 848 869 IPR001611 GO:0005515
Gso6g2171 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 453 IPR027417 -
Gso6g2171 1091 SUPERFAMILY L domain-like 498 939 - -
Gso6g2171 1091 Pfam Leucine Rich Repeat 619 638 IPR011713 -
Gso6g2171 1091 Pfam NB-ARC domain 219 429 IPR002182 GO:0043531
Gso6g2171 1091 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 701 - -
Gso6g2171 1091 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 701 986 - -
Gso6g2171 1091 PRINTS Disease resistance protein signature 220 235 - -
Gso6g2171 1091 PRINTS Disease resistance protein signature 296 310 - -
Gso6g2171 1091 PRINTS Disease resistance protein signature 394 408 - -
Gso6g2171 1091 PRINTS Disease resistance protein signature 638 654 - -
Gso6g2171 1091 Gene3D - 187 354 IPR027417 -
Gso6g2171 1091 Pfam TIR domain 19 182 IPR000157 GO:0007165
Gso6g2171 1091 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 701 986 IPR044974 GO:0006952
Gso6g2171 1091 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 701 IPR044974 GO:0006952
Gso6g2171 1091 Pfam C-JID domain 947 1084 IPR045344 -
Gso6g2171 1091 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Gso6g2171 1091 Gene3D - 359 443 IPR042197 -
Gso6g2171 1091 Gene3D - 12 186 IPR035897 -
Gso6g2171 1091 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 162 IPR035897 -
Gso6g2171 1091 SMART till_3 19 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2171 Gso-Chr6 41606195 41610449 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2171 15 772 WRKY Transcription Factor Family AT4G12020 28.141 5.34e-71 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2171 - - gmx:100778550 1901.33