Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2168 ATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAATCAGCAGCAAGAAACGTTAGGTTTGAGAGTGGTGAATCACAGTCTTCTTCTTCTGGCCTCACCAACAACATGGGAAGCTATGCAGCTTCTTGGCAACAACATGACATGGCAACAACAAGGTCTTCTAATTCTTCCATAGATAATAACTCTGTCTCAGGTGGTTCCTCTGTGATGTTCCATGACCAGAAGCAGCTTCAACAAGTTCAGCCACATCATCATGAGTCTTCAGCTGCAGCCACTTCCACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTCTCTTCTCAAGCCATGGACTGGAATCAAGCATCTTTGCAGCTCCGAGGTGAGAAGGGTTCAGAAAGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAAATACCAATTTTCAGCCGCAAGAAAGTGGGAGCAATATAGGGTTGTCTCAACACCACCACCATCACCATCATCATCAACAACTTCATTGGAGGCCAGAAAAGTTGTTCTCTGCCGAGTCATCAAGCAACGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTTTCTCCTCAATACAGCTCTGGGGACAGCAATGTCACAAGCCAAGGCTTGCCTTGTTCTTTTCAGATGGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTTTTGGGACAAGAGAGCAACAACAACAACAACCAACAACAACAACAACCTTACCAAGGTGGTGGTGGTGGTGCCATGAATTTTGCTTACTCAGCAGCAGCAAGCTATGGTTTGAACTCCAATGTTGAGTTGGTGCGTTCTTGGTCCAAAGTTCCTCAGTTTCTGAGAGCTTCACCGCCAAAACAACAACCCAATAATCAGTTGCATTTCACCAACAACGCACCCTTTTGGAACGCGAATTCTGAGCCTGCTATTAAGGATTCTCGATCCAGCTTCATCCCTTCTTTGCATCCACCCTTCTCCACATCAAATTTCGATGTACAATCAAAGAATATATCTGAAGTTAGAGATTCGGGTGGTGTGGTAAAGAAAAGTGGAAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCGTATATGAAAAGTGGTGCTCCCATACAGCATCAGCAGAGTTCTGGAAAATCTAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAG 1470 0.4551 MSDDQFQASGNWWESAARNVRFESGESQSSSSGLTNNMGSYAASWQQHDMATTRSSNSSIDNNSVSGGSSVMFHDQKQLQQVQPHHHESSAAATSTNDPNLHMMGLGLSSQAMDWNQASLQLRGEKGSESSFRSMLQENLSSSNTNFQPQESGSNIGLSQHHHHHHHHQQLHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSNVTSQGLPCSFQMDYVGNPSSILQGLLGQESNNNNNQQQQQPYQGGGGGAMNFAYSAAASYGLNSNVELVRSWSKVPQFLRASPPKQQPNNQLHFTNNAPFWNANSEPAIKDSRSSFIPSLHPPFSTSNFDVQSKNISEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2168 489 MobiDBLite consensus disorder prediction 349 377 - -
Gso6g2168 489 MobiDBLite consensus disorder prediction 230 254 - -
Gso6g2168 489 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 10 478 - -
Gso6g2168 489 MobiDBLite consensus disorder prediction 124 157 - -
Gso6g2168 489 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 418 IPR011598 GO:0046983
Gso6g2168 489 CDD bHLH_AtbHLH_like 375 426 IPR045239 -
Gso6g2168 489 MobiDBLite consensus disorder prediction 46 101 - -
Gso6g2168 489 MobiDBLite consensus disorder prediction 433 457 - -
Gso6g2168 489 SMART finulus 380 424 IPR011598 GO:0046983
Gso6g2168 489 MobiDBLite consensus disorder prediction 124 173 - -
Gso6g2168 489 MobiDBLite consensus disorder prediction 230 255 - -
Gso6g2168 489 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 379 436 IPR036638 GO:0046983
Gso6g2168 489 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 10 478 - -
Gso6g2168 489 Gene3D - 379 441 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2168 Gso-Chr6 41542672 41547068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2168 123 489 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.059 5.77e-81 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2168 - - gmx:100797286 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2168 6 41542672 41547068 Gso6g2168 6 41542672 41547068 ECH