Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2166 ATGGCTTCTGCTTCTAATGCCATCATCCAATGCACCTCTTCTTCTTCTTCTTCGTTTGAGTATGACGTGTTTGTGAGCTTCCGCGGTGAAGACACACGCAACAGCTTCACCGCTTTTCTTTTTGAAGCTCTGAAAAAACAAGGCATCGAGGCCTTCAAAGATGATAAAGATATCAGGAAAGGCGAATCCATAGCACCAGAGCTAATACGAGCCATTGAAGGGTCTCATGTTTTCCTTGTTGTCTTTTCCAAGGACTATGCTTCCTCAACTTGGTGCCTGCGTGAACTAGCACATATCTGGAATTGCTTTCAACCATCTACCAGACATCTTCTGCCTATTTTCTATGATGTTGATCCATCACAAGTGCGAAAACTGAGTGGAGACTATGAGAAAGCCTTTGCCCAACACCAACAAAGTTCCAGGTTCCAAGAGAAGGAAATTACAACATGGAGAGAAGTTCTGGAACGAGTAGCCAGTCTCTCTGGTTGGGATATCAGAAATAAGGAACAACCTACAGTGATTGATGAAATTGTTCAGAAGATAAAAAAAATCGTGGGTTGCAAATTTTCTATTCTTCGAAATGATAATCTAGTTGGGATGGAATCTCATTTTTCTACATTATCAAAGCAGCTGGGGCCGGTTAATGATGTTCGAGTTGTTGGAATTACTGGGATGGGTGGAATAGGAAAGTCCACTCTTGGTCGAGCTTTATATGAAAGAATCTCTCATCAATTTAATTCTTCTTGTTATATTGATGACGTAAGCAAACTTTATCGACTGGAAGGTTCAGCAGGTGTACAAAAAGACTTACTTTCTCAGTCTCTAAATGAAACAAATCTAAAGATTAGGAATTTATCTTATGGAACAGACCTGGCATGGAGGAGGCTACACAATGCAAAGGCACTTATAGTTCTTGACAATGTTGAAGAAGATAAACAGCTTAATATGTTTACTGCGAATAGAAATAATCTGTTACGAGAACGCCTTGGTAGAGGAAGCATAGTCATTATAATTTCTAGGGATCAACAAATATTGAAGGCACGTGGAGCAGATCTTATTTACCAAGTGAAGCCATTGGATGACACCGATGCTCTTCGATTGTTTTGCAAAAATGCATTTAAAAATAATTATATTATGAGTGATTTTAAAACGTTGACTTCTCATGTACTATCACATTGTGAAGGTCATCCCTTAGCAATTGAAGTATTGGGCTCATCTTTGTTTGGTAAAGATGTCTCTTATTGGGGGAGTGCATTGGTTTCCTTAAGAGAAAGTAAAAGTATTATGGATGTGTTGCGAATAAGTTTTGATCAATTGGAGGATACACACAAGGAAATATTTCTAGATATTGCATGTTTCTTGTACGATCATGATGTGATATATGTGAAGGAAATTCTAGATTTTCGTGGATTTAATCCCGAATACGGCCTACAAGTTCTCGTTGATAAATCACTTATAACCATGCGTAGGATAGTTGAAATGCATGACGTTTTGCGCAATTTGGGCAAGTATATTGTTAGAGAAAAATCACCTTGGAATCCATGGAAGTGGAGTAGGTTGTGGGATTTCAAAGATCTCAACATAGTTTCGTTGGATAATAAGGCAACAGAAAATGTTGAGGCCATAGTTCATGAAGAAGACTATGACATTGAAAAAGACTCTGACTTAGAAGAAGACTCTAACTTAGAAGACTCTGACTTAGAAGAAGACTCTGACTTAGAAGAAGACTCTGACTTAGAAGACTATGACTTAGAAGACTATGACTTAGAAGAAGACTCTGACTTAGAAGACTCTCACTTTCTTCCAACAGTGAGGGTGGATGCTCTATCAACAATGAGTAACCTTAAACTTCTCAAATTTAGATACGCTGGCTACGAAATCAATTATTCAGGAACACTTACTAAGCTTTCCAATGAATTAGGATATCTTACTTGGGTAAAGTATCCTTTTGAGTGTTTGCCACCAAGTTTTGAGCCGGACAAACTTGTTGAGTTGATTCTACCTAAAAGCAACATCAAACAACTTTGGGAAGGTAGAAAGCCTCTACCCAATTTGAGGCGTTTGGATCTCTCTGGCTCCAAAAATCTAATAAAAATGCCATATATTGGAGATGCCCTATATCTTGCGTGGCTTAATCTCGAAGGATGTATACAACTCGAAGAGATCGGTCTGTCCGTTCTTTCACGAAAGCTTACTTCTCTGAATTTGAGAAATTGCAAAAGTCTTATCAAGTTGCCACAGTTTGGAGAGGACCTAATTCTTAAAAAGCTATATCTCGAAGGATGTCAAAGTCTCAGTCACATTGATCAATCCATCGGTTTTCTAAAAAACCTCGATCATTTGAATATGGAAAACTGCAAACAACTCAAACGCATTGATCCATCCATCGGTTTTCTAGAAAAGCTCAGAGAATTGAATTTGAAAAACTGCAAAAATCTAGAAAGCTTACCCAATAGCATACTAGGTCTCAATTCTCTTGAATATCTGAATCTCTCTGGCTGTGTAAAACTGTACAACACCGAGTTATTATATGAACTAAGGGATGCAGGGCAATTGAAGAAGATTGGTATAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCTACTCCAGACAACATCAAAAATCAGTTAGTTGCTCAATGCCTTCCTCCCCAATATTTCCATGTATGCGTCAACTTGATCTAAGTTTCTGTAATTTAGTTGAAATCCCTGATGCTATTGGAATTATGAGTTGCTTAGAATGGCTAGATTTAAGTGGTAACAATTTTGCTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGTTGTGTTTAAAGTTACAACATTGCAAGCAGTTGAAATCTTTGCCTGAGCTCCCTTCACGGATTGAAATCCCAACTGGTGAAAGCTATTTTGGAAACAAAACAGGATTATACATTTTTAATTGCCCAAAATTATTTGATAGGAAACGCTGCAGTAACATGGCTTTTTCATGGATGATGCAATTGTATCAGGTGATCCATTCTTTTTACAGATCTGAAGGTGTTAGTCCTGGAAGTGAAATACCAAAGTGGTTCAATAATGAGCATGAGGGAAATTGTGTAAGCTTAGACGCATCTCATGTTATGCATGACGATAATTGGATTGGCGTTGCGTTTTGTGCAATATTCGTCGTACCTCATGAAACAATCTCAGCGATGGCTTTTTCAAAAACAGATGGGTACTACTCGGGTTTTAGTGATATTCCAGTGGATTTTTATGAAGATCTAGATCAAGAACTTGTTTTAGACAAATCAGATCACATGTGGCTATTCTTTCTTGATCGAGAAACGTTCATTGAAAAATTCCATCTCAAGCACAAATATCTTGGAAGATTTCTTTTGAAATATGATAGAGGATGA 3384 0.3785 MASASNAIIQCTSSSSSSFEYDVFVSFRGEDTRNSFTAFLFEALKKQGIEAFKDDKDIRKGESIAPELIRAIEGSHVFLVVFSKDYASSTWCLRELAHIWNCFQPSTRHLLPIFYDVDPSQVRKLSGDYEKAFAQHQQSSRFQEKEITTWREVLERVASLSGWDIRNKEQPTVIDEIVQKIKKIVGCKFSILRNDNLVGMESHFSTLSKQLGPVNDVRVVGITGMGGIGKSTLGRALYERISHQFNSSCYIDDVSKLYRLEGSAGVQKDLLSQSLNETNLKIRNLSYGTDLAWRRLHNAKALIVLDNVEEDKQLNMFTANRNNLLRERLGRGSIVIIISRDQQILKARGADLIYQVKPLDDTDALRLFCKNAFKNNYIMSDFKTLTSHVLSHCEGHPLAIEVLGSSLFGKDVSYWGSALVSLRESKSIMDVLRISFDQLEDTHKEIFLDIACFLYDHDVIYVKEILDFRGFNPEYGLQVLVDKSLITMRRIVEMHDVLRNLGKYIVREKSPWNPWKWSRLWDFKDLNIVSLDNKATENVEAIVHEEDYDIEKDSDLEEDSNLEDSDLEEDSDLEEDSDLEDYDLEDYDLEEDSDLEDSHFLPTVRVDALSTMSNLKLLKFRYAGYEINYSGTLTKLSNELGYLTWVKYPFECLPPSFEPDKLVELILPKSNIKQLWEGRKPLPNLRRLDLSGSKNLIKMPYIGDALYLAWLNLEGCIQLEEIGLSVLSRKLTSLNLRNCKSLIKLPQFGEDLILKKLYLEGCQSLSHIDQSIGFLKNLDHLNMENCKQLKRIDPSIGFLEKLRELNLKNCKNLESLPNSILGLNSLEYLNLSGCVKLYNTELLYELRDAGQLKKIGIDGAPIHFQSTSSYSRQHQKSVSCSMPSSPIFPCMRQLDLSFCNLVEIPDAIGIMSCLEWLDLSGNNFATLPNLKKLSKLLCLKLQHCKQLKSLPELPSRIEIPTGESYFGNKTGLYIFNCPKLFDRKRCSNMAFSWMMQLYQVIHSFYRSEGVSPGSEIPKWFNNEHEGNCVSLDASHVMHDDNWIGVAFCAIFVVPHETISAMAFSKTDGYYSGFSDIPVDFYEDLDQELVLDKSDHMWLFFLDRETFIEKFHLKHKYLGRFLLKYDRG* 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2166 1127 ProSiteProfiles Leucine-rich repeat profile. 913 934 IPR001611 GO:0005515
Gso6g2166 1127 SMART till_3 20 160 IPR000157 GO:0007165
Gso6g2166 1127 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Gso6g2166 1127 Pfam Leucine Rich Repeat 661 678 IPR011713 -
Gso6g2166 1127 Gene3D - 13 187 IPR035897 -
Gso6g2166 1127 Pfam NB-ARC domain 202 422 IPR002182 GO:0043531
Gso6g2166 1127 Gene3D - 191 352 IPR027417 -
Gso6g2166 1127 Gene3D Ribonuclease Inhibitor 861 990 IPR032675 -
Gso6g2166 1127 Gene3D Ribonuclease Inhibitor 536 753 IPR032675 -
Gso6g2166 1127 Gene3D Ribonuclease Inhibitor 754 848 IPR032675 -
Gso6g2166 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 450 IPR027417 -
Gso6g2166 1127 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Gso6g2166 1127 MobiDBLite consensus disorder prediction 550 581 - -
Gso6g2166 1127 PRINTS Disease resistance protein signature 219 234 - -
Gso6g2166 1127 PRINTS Disease resistance protein signature 295 309 - -
Gso6g2166 1127 PRINTS Disease resistance protein signature 393 407 - -
Gso6g2166 1127 PRINTS Disease resistance protein signature 680 696 - -
Gso6g2166 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 776 1054 IPR044974 GO:0006952
Gso6g2166 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 597 767 IPR044974 GO:0006952
Gso6g2166 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 742 792 IPR044974 GO:0006952
Gso6g2166 1127 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 527 IPR044974 GO:0006952
Gso6g2166 1127 Pfam TIR domain 21 183 IPR000157 GO:0007165
Gso6g2166 1127 Gene3D - 359 440 IPR042197 -
Gso6g2166 1127 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 776 1054 - -
Gso6g2166 1127 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 597 767 - -
Gso6g2166 1127 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 742 792 - -
Gso6g2166 1127 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 527 - -
Gso6g2166 1127 SUPERFAMILY L domain-like 495 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2166 Gso-Chr6 41519118 41533019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2166 16 837 WRKY Transcription Factor Family AT4G12020 27.705 2.50e-72 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2166 - - gsj:114416978 2118.2