Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2164 ATGGCTTCTACTTCTAATGCCATCTTCCAATGCACCTCTTCTTCTTCTTCTTCGTTTGAGTATGACGTGTTTGTGAGCTTCCGCGGTGAAGACACACGCAACAGCTTCACCGCTTTTCTTTTTGAAGCTCTGAAAAAACAAGGCATCGAGGCCTTCAAAGATGATAAAGATATCAGGAAAGGCGAATCCATAGCACCAGAGCTAATACGAGCCATTGAAGGGTCTCATGTTTTCCTTGTTGTCTTTTCCAAGGACTATGCTTCCTCAACTTGGTGCCTGCGTGAACTAGCACATATCTGGAATTGCATTCAAACATCTCCCAGACTTCTTCTGCCTATTTTTTATGATGTTGATCCATCACAAGTGCGAAAACAGAGTGGAGACTATGAGAAAGCCTTTGCCCAACACCAACAAAGTTCCAGGTTCCAAGACAAGGAAATTAAAACATGGAGAGAAGTTCTGAACCATGTAGCCAGTCTCTCTGGTTGGGATATCAGAAATAAGCAACAACATGCAGTGATTGAAGAAATTGTTCAGCAGATAAAAAATATCTTGGGTTGCAAATTTTCTATTCTTCCATATGATAATCTAGTTGGGATGGAATCTCATTTTGCTAAATTGTCAAAGCTAATATGTCTGGGGCCGGTTAATGATGTTCGAGTTGTTGGAATTACTGGCATGGGTGGAATAGGAAAGTCCACTCTTGGTCGAGCTTTATATGAAAGAATCTCTTATCGATTTAATTCTTCTTGTTATATTGATGACATAAGCAAACTTTATGGACTTGAAGGTCCATTAGGTGTACAAAAGCAATTACTTTCTCAATCTCTAAAGGAAAGAAATCTAGAGATTTGCAATGTATCTGATGGAACAATTTTGGCATGGAATAGGCTAGCCAATGCAAATGCACTTATAGTTCTTGACAATGTTGATCAAGATAAACAACTTGATATGTTTACAGGGAGTAGAAATGATCTGTTACGTAAACGCCTAGGTAAAGGGAGCATAATTATTATAATTTCTAGGGATCAACAAATATTGAAGGCACATGGAGTAGATGTTATTTACCAAGTGAAGCCATTGAATGACAATGATGCTCTTCGATTGTTTTGCAAAAAAGTATTCAAAAATAATTATATCATGAGTGATTTTGAAAAGTTGACTTATGATGTACTATCACATTGTAAAGGTCATCCTTTAGCAATTGAAGTAGTAGGCTCATCTTTATTTGATAAAGATGTTTTACATTGGAGAAGTGCATTAACTTGGTTAAGGGAAAATAAAAGTAAAAGTATTATGAATGTGTTGCGAATAAGTTTTGATCAATTAGAGGATACACACAAGGAAATATTTCTAGATATTGCATGTTTCTTCAACAATGATATGGTGGAATATGTGAAGGAAGTTCTAGATTTTCGTGGATTTAATCCCGAATCTGGCCTACTAGTTCTCGTTGATAAATCACTCATAACCATGGATTCAAGGGTGATTCGAATGCATGACTTGTTGTGCGATTTGGGCAAGTATATTGTTAGAGAAAAATCGCCTAGGAAGCCATGGAAGTGGAGCAGGTTGTGGGATGTTAAAGATTTCCTTAAAGTTAAGTCAGATAATAAGGCAGCAGAAAATGTTGAGGCCATAGTTCTTTCAAAAAAATCTGTCATTCTTCAAACAATGAGGATCGATGCTCTATCAACAATGAGTAGCCTTAAGCTTCTCAAATTTGGATATAAGAACGTTGGCTTCCAAATTAATTTTTCAGGAACACTTGCTAAGCTTTCCAATGAATTAGGATATCTTAGTTGGATAAAGTATCCTTTTGAGTGTTTGCCACCAAGTTTTGAACCGGACAAACTTGTTGAGTTGAGACTACCTTACAGCAACATCAAACAACTTTGGGAAGGTACAAAGCCTCTACCCAATTTGAGGCGTTTGGATCTCTTTGGCTCCAAAAATCTAATTAAAATGCCATATATTGAAGATGCCCTATATCTTGAGAGTCTTAATCTCGAAGGATGTATACAACTCGAAGAGATCGGCCTGTCCATTGTTCTTTCACCAAAGCTTACTTCTCTGAATTTAAGAAATTGCAAAAGTCTTATCAAGTTGCCACGGTTTGGAGAGGACCTAATTCTTGGAAAGCTAGTTCTCGAAGGATGTCGAAAACTCAGACACATTGATCCATCCATCGGTCTTCTAAAAAAGCTCAGAGAATTGAATTTGAAAAACTGCAAAAATCTAGTAAGCTTACCCAATAGCATACTAGGCCTCAATTCTCTTCAATATCTGAATCTCTCTGGCTGTTCAAAAGTGTACAACACCGAGTTATTGTATGAACTAAGGGATGCAGAGCAATTGAAGAAGATTGATAAAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCGACTCCAGACAACATAAAAAATCAGTTAGTTGCTTAATGCCTTCCTCCCCAATATTTCAATGTATGCGTGAACTTGATCTAAGTTTCTGTAATTTAGTTGAAATCCCTGATGCTATTGGAATTATGAGTTGCTTAGAAAGGCTAGATTTAAGTGGTAACAATTTTGCTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGGTCTGTTTAAAGTTACAACATTGCAAGCAGTTGAAATCTTTGCCTGAGCTCCCTTCACGGATTGAAATCCCAACTCCTGCAGGCTATTTTGGAAACAAAGCAGGATTATACATTTTTAACTGCCCAAAATTAGTTGATAGGGAACGCTGCACTAACATGGCTTTTTCATGGATGATGCAATTGTGTTCTCAGGTGAGATTGTTCTCTTTATGGTATTACCATTTTGGAGGTGTTACTCCAGGAAGTGAAATACCAAGGTGGTTCAATAATGAGCATGAGGGAAATTGTGTAAGCTTAGACGCATCTCCTGTTATGCATGACCGTAATTGGATTGGCGTTGCGTTTTGTGCAATATTCGTCGTACCTCATGAAACACTCTTAGCAATGGGTTTTTCAAATTCAAAAGGGCCAAGGCATTTGTTTGGTGATATTCGAGTGGATTTTTATGGAGATGTAGATCTAGAACTTGTTTTAGACAAATCAGATCACATGTGCCTATTCTTTCTTAAACGACATGACATCATTGCAGATTTCCATCTCAAGCACAGATATCTTGGCAGATGGGTTTCGAGATATGATGGAGTGTTGAAAGAGTCATATGCGGAGGTGAAGAAATACGGATATCGCTGGGTATATAAAGGGGATATAGAACAAAGGAAGCGCAAATTTGGGGAAATTGAAGAAAAGTGA 3300 0.3767 MASTSNAIFQCTSSSSSSFEYDVFVSFRGEDTRNSFTAFLFEALKKQGIEAFKDDKDIRKGESIAPELIRAIEGSHVFLVVFSKDYASSTWCLRELAHIWNCIQTSPRLLLPIFYDVDPSQVRKQSGDYEKAFAQHQQSSRFQDKEIKTWREVLNHVASLSGWDIRNKQQHAVIEEIVQQIKNILGCKFSILPYDNLVGMESHFAKLSKLICLGPVNDVRVVGITGMGGIGKSTLGRALYERISYRFNSSCYIDDISKLYGLEGPLGVQKQLLSQSLKERNLEICNVSDGTILAWNRLANANALIVLDNVDQDKQLDMFTGSRNDLLRKRLGKGSIIIIISRDQQILKAHGVDVIYQVKPLNDNDALRLFCKKVFKNNYIMSDFEKLTYDVLSHCKGHPLAIEVVGSSLFDKDVLHWRSALTWLRENKSKSIMNVLRISFDQLEDTHKEIFLDIACFFNNDMVEYVKEVLDFRGFNPESGLLVLVDKSLITMDSRVIRMHDLLCDLGKYIVREKSPRKPWKWSRLWDVKDFLKVKSDNKAAENVEAIVLSKKSVILQTMRIDALSTMSSLKLLKFGYKNVGFQINFSGTLAKLSNELGYLSWIKYPFECLPPSFEPDKLVELRLPYSNIKQLWEGTKPLPNLRRLDLFGSKNLIKMPYIEDALYLESLNLEGCIQLEEIGLSIVLSPKLTSLNLRNCKSLIKLPRFGEDLILGKLVLEGCRKLRHIDPSIGLLKKLRELNLKNCKNLVSLPNSILGLNSLQYLNLSGCSKVYNTELLYELRDAEQLKKIDKDGAPIHFQSTSSDSRQHKKSVSCLMPSSPIFQCMRELDLSFCNLVEIPDAIGIMSCLERLDLSGNNFATLPNLKKLSKLVCLKLQHCKQLKSLPELPSRIEIPTPAGYFGNKAGLYIFNCPKLVDRERCTNMAFSWMMQLCSQVRLFSLWYYHFGGVTPGSEIPRWFNNEHEGNCVSLDASPVMHDRNWIGVAFCAIFVVPHETLLAMGFSNSKGPRHLFGDIRVDFYGDVDLELVLDKSDHMCLFFLKRHDIIADFHLKHRYLGRWVSRYDGVLKESYAEVKKYGYRWVYKGDIEQRKRKFGEIEEK* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2164 1099 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Gso6g2164 1099 SUPERFAMILY L domain-like 498 946 - -
Gso6g2164 1099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 700 IPR044974 GO:0006952
Gso6g2164 1099 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 700 964 IPR044974 GO:0006952
Gso6g2164 1099 Gene3D - 192 355 IPR027417 -
Gso6g2164 1099 Pfam NB-ARC domain 218 434 IPR002182 GO:0043531
Gso6g2164 1099 Gene3D - 18 188 IPR035897 -
Gso6g2164 1099 PRINTS Disease resistance protein signature 221 236 - -
Gso6g2164 1099 PRINTS Disease resistance protein signature 297 311 - -
Gso6g2164 1099 PRINTS Disease resistance protein signature 395 409 - -
Gso6g2164 1099 PRINTS Disease resistance protein signature 731 747 - -
Gso6g2164 1099 Pfam Leucine Rich Repeat 618 637 IPR011713 -
Gso6g2164 1099 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Gso6g2164 1099 Gene3D Ribonuclease Inhibitor 797 969 IPR032675 -
Gso6g2164 1099 Gene3D Ribonuclease Inhibitor 543 711 IPR032675 -
Gso6g2164 1099 Gene3D Ribonuclease Inhibitor 712 789 IPR032675 -
Gso6g2164 1099 Pfam C-JID domain 950 1087 IPR045344 -
Gso6g2164 1099 Pfam TIR domain 21 183 IPR000157 GO:0007165
Gso6g2164 1099 Gene3D - 360 444 IPR042197 -
Gso6g2164 1099 SMART till_3 20 160 IPR000157 GO:0007165
Gso6g2164 1099 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 700 - -
Gso6g2164 1099 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 700 964 - -
Gso6g2164 1099 ProSiteProfiles Leucine-rich repeat profile. 847 868 IPR001611 GO:0005515
Gso6g2164 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2164 Gso-Chr6 41496712 41501025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2164 16 851 WRKY Transcription Factor Family AT4G12020 27.950 8.18e-79 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2164 - - gmx:113001952 2172.13