Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2162 ATGGCTTCTACTTCTAATGCCATCATCCAATGCACCTCTTCTTCTTCTTCTTCGTTTCAGTATGACGTGTTTGTGAGCTTCCGCGGTGAAGACACACGCAACAGCTTCACCGCTTTTCTTTTTGAAGCTCTGAAAAAACAAGGCATCGAGGCCTTCAAAGATGATAAAGATATCAGGAAAGGCGAATCCATAGCACCAGAGCTAATACGAGCCATTGAAGGGTCTCACGTTTTCGTTGTTGTCTTTTCCAAGGACTATGCTTCCTCAACTTGGTGCCTGCGTGAACTAGCACATATCTGGAATTGCATTCAAACATCACGCAGACCTCTTCTGCCCATTTTTTATGATGTTGATCCATCACAAGTGCGAAAACAGAGTGGAGACTATCAGAAAGCCTTTTCCCAACACCAACAAAGTTCCAGGTTCCAAGAGAAGGAAATTACAACATGGAGAAAAGTTCTGGAACAAGTAGCCGGTCTCTGTGGTTGGGATATCAGAAATAAGCAACAACATGCAGTGATTGAAGAAATTGTTCAGCAGATAAAAAATATCGTGGGTTGCAAATTTTCTATTCTTCCATATGATAATCTAGTTGGGATGGAATCTCATTTTGCTAAATTATCAAAGCTAATATGTCTGGGGCCGGTTAATGATGTTCGAGTTGTTGGAATTACTGGCATGGGTGGAATAGGAAAATCTACTCTTGGTCGAGCTTTATATGAAAGAATCTCTCATCAATTTAATTCTCGTTGTTATATTCATGATGTAAGCAAACTTTATCAACGTGATGGTATATTAGGTGTACAAAAGCAATTACTTTCTCAATCTTTAAATGAAAGAAATCTAGAGATTTGGAATGTATCTGATGGAACACTTCTGGCATGGAAGAGGCTATCCAATGCAAAGGCACTTATAGTTCTTGACAATGTTGATCAAGATAAACAACTAGATATGTTTACTGGGGGTAGAGTTGATCTGTTGTGCAAATGCCTTGGTAGAGGAAGCATGGTCATTATAATTTCTAGAGATAAACAAATATTGAAGGCACATGGAGTAGATCTTATTTACCAAGTGAAGCCATTGAATAACAATGATGCTCTTCAATTGTTTTGCAAAAAAGCATTCAAAAATAATTATATTATGAGTGATTTTGAAAAGTTGACTTCTGATGTACTATCACATTGTAAAGGTCATCCCTTAGCAATTGAAGTACTGGGCTCATCTTTGTTTGATAAACATGTCTCTCATTGGAGGAGTGCATTGATTTCGTTAAGAGAAAATAAAAGTAAAAGTATTATGGATGTGTTGCGAATAAGTTTTGATCAATTAGAGGATACCCACAAGGAAATATTTCTAGATATTGCATGTTTCTTAAGCAAAAATATGCTATGGGGGGAATATTTGAAGGAAGTTCTAGATTTTCGTGAATTTAATCCCGAGTATGGCCTACAAGTTCTCGTTGATAAATCACTTATAACCATGAATTTTATTTTTGGGGAGATTCAAATGCATGACTTGTTGTGCGATTTGGGCAAGTGTATTGTTAGAGAAAAATCACCTAGAAAGCCATGGAAGTGGAGCAGATTGTGGGATGCTAAAGATTTCCACAAAGTTATGTCAAATAATAAGGCAGCAGAAAATGTTGAGGCCATAGTTCTTACAGAAAAATCTGACATTCTTGGAACAATTCGAACAATGAGGGTCGATGCTCTATCAACAATGAGTTGCCTTAAGCTTCTCAAACTTGAATATTTGAACTCTGAAATCAATTTTTCAGGAACACTTACTAAGCTTTCCAATGAATTAGGATATCTTAGTTGGAAAAAGTATCCTTTTGAGTGTTTGCCACCAAGTTTTGAGCCGGACAAACTTGTTGAGTTGATACTAAGTGACAGCAACATCAAACAACTTTGGGAATGCACAAAGCCTCTACCCAATTTGAGGCGTTTGGATCTCTCTGGCTCCAAAAATCTAATAAAAATGCCATATATTGGAGATGCCCTATATCTTGAGAGTTTTAATCTCGAAGGATGTATACAACTCGAAGAGATCGGTCTGTCCGTTGTTCTTTCACGAAAGCTTTTTTATCTGAATTTGAGAAATTGCAAAAGTCTTATCAAGTTGCCACAGTTTGGAGATGACCTAATTCTTGAAAATTTAGATCTCGAAGGATGTCAAAAACTCAGACGCATTGATCCATCCATCGGTCTTCTAAAAAAGCTCATAAGATTGAATTTGAACAACTGCAAAAATCTAGTAAGCTTACCCAATAGCATACTAGGCCTCAATTCTCTTGTATGGCTGTATCTCTCTGGCTGTTCAAAACTGTACAACACCGAGTTATTATATGAACTAAGGGATGCAGAGCAATTGAAGAAGATTGATATAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCTACTCCATACAACATCAAAAATCAGTTAGTTGCTCAATGCCTTCCTCCCCAATATTTCCATGGATGCGTGAACTTGATCTAAGTTTCTGTAATTTAGTTGAAATCCCTGATGCTATTGGAATTATGAGTTGCTTAGAAAGGCTAGATTTAAGTGGTAACAATTTTGCTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGGTCTGTTTAAAGTTACAACATTGCAAGCAGTTGAAATCTTTGCCCGAGCTCCCTTCACCAATTCTTCGGCGCCAACGAACAGGATTATACATTTTTAACTGCCCAGAATTAGTTGATAGGGAACACTGCACTGACATGGCTTTTTCATGGATGATGCAATTTTGTTCGCCTAAGGAAATAACTTCATACATTGATGAAAGTGTTACTCCAGGAAGTGAAATACCAAGGTGGTTCAATAATGAGCATGGGGGAAATTGTGTAAGCTTAGACGCATCTCCTGTTATGCATGACCATAATTGGATTGGGGTTGCGTTTTGTGCAATATTCGTCGTACCTCATGAAACACTCTCTGCAATGAGTTTTTCAGAGACAGAATGGAACTACCCTGTTTTTGGTGATATTCCAGTGGATTTTTATGAAGATGTAGATCTAGAACTTGTTTTAGACAAATCAGATCACATGTGGCTATTCTATGTTGATCGACATGACTTCATTGCAGATTTCCATCTCGATGACAAATATCTTGGCAGATTGCTTTTGAAATGTGATGAAGGGATAGGGTTCAAAGAGTCATATGCTGAGGTGAAGAAATACGGATATCGCTGGGTATATAAAGGGGATATAGAACAAAGGAAGCGCAAATTTGGGGAAATTGAAGAAAATGTGAGCAGAAGGGAGAAAAGATGA 3312 0.3768 MASTSNAIIQCTSSSSSSFQYDVFVSFRGEDTRNSFTAFLFEALKKQGIEAFKDDKDIRKGESIAPELIRAIEGSHVFVVVFSKDYASSTWCLRELAHIWNCIQTSRRPLLPIFYDVDPSQVRKQSGDYQKAFSQHQQSSRFQEKEITTWRKVLEQVAGLCGWDIRNKQQHAVIEEIVQQIKNIVGCKFSILPYDNLVGMESHFAKLSKLICLGPVNDVRVVGITGMGGIGKSTLGRALYERISHQFNSRCYIHDVSKLYQRDGILGVQKQLLSQSLNERNLEIWNVSDGTLLAWKRLSNAKALIVLDNVDQDKQLDMFTGGRVDLLCKCLGRGSMVIIISRDKQILKAHGVDLIYQVKPLNNNDALQLFCKKAFKNNYIMSDFEKLTSDVLSHCKGHPLAIEVLGSSLFDKHVSHWRSALISLRENKSKSIMDVLRISFDQLEDTHKEIFLDIACFLSKNMLWGEYLKEVLDFREFNPEYGLQVLVDKSLITMNFIFGEIQMHDLLCDLGKCIVREKSPRKPWKWSRLWDAKDFHKVMSNNKAAENVEAIVLTEKSDILGTIRTMRVDALSTMSCLKLLKLEYLNSEINFSGTLTKLSNELGYLSWKKYPFECLPPSFEPDKLVELILSDSNIKQLWECTKPLPNLRRLDLSGSKNLIKMPYIGDALYLESFNLEGCIQLEEIGLSVVLSRKLFYLNLRNCKSLIKLPQFGDDLILENLDLEGCQKLRRIDPSIGLLKKLIRLNLNNCKNLVSLPNSILGLNSLVWLYLSGCSKLYNTELLYELRDAEQLKKIDIDGAPIHFQSTSSYSIQHQKSVSCSMPSSPIFPWMRELDLSFCNLVEIPDAIGIMSCLERLDLSGNNFATLPNLKKLSKLVCLKLQHCKQLKSLPELPSPILRRQRTGLYIFNCPELVDREHCTDMAFSWMMQFCSPKEITSYIDESVTPGSEIPRWFNNEHGGNCVSLDASPVMHDHNWIGVAFCAIFVVPHETLSAMSFSETEWNYPVFGDIPVDFYEDVDLELVLDKSDHMWLFYVDRHDFIADFHLDDKYLGRLLLKCDEGIGFKESYAEVKKYGYRWVYKGDIEQRKRKFGEIEENVSRREKR* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2162 1103 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 705 987 IPR044974 GO:0006952
Gso6g2162 1103 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 705 IPR044974 GO:0006952
Gso6g2162 1103 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Gso6g2162 1103 Gene3D - 192 354 IPR027417 -
Gso6g2162 1103 PRINTS Disease resistance protein signature 221 236 - -
Gso6g2162 1103 PRINTS Disease resistance protein signature 297 311 - -
Gso6g2162 1103 PRINTS Disease resistance protein signature 395 409 - -
Gso6g2162 1103 PRINTS Disease resistance protein signature 642 658 - -
Gso6g2162 1103 SUPERFAMILY L domain-like 503 913 - -
Gso6g2162 1103 Pfam Leucine Rich Repeat 623 642 IPR011713 -
Gso6g2162 1103 Gene3D - 360 444 IPR042197 -
Gso6g2162 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 454 IPR027417 -
Gso6g2162 1103 Pfam TIR domain 20 183 IPR000157 GO:0007165
Gso6g2162 1103 Pfam C-JID domain 945 1084 IPR045344 -
Gso6g2162 1103 SMART till_3 20 160 IPR000157 GO:0007165
Gso6g2162 1103 Pfam NB-ARC domain 218 432 IPR002182 GO:0043531
Gso6g2162 1103 Gene3D Ribonuclease Inhibitor 717 800 IPR032675 -
Gso6g2162 1103 Gene3D Ribonuclease Inhibitor 562 716 IPR032675 -
Gso6g2162 1103 Gene3D Ribonuclease Inhibitor 805 899 IPR032675 -
Gso6g2162 1103 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 705 - -
Gso6g2162 1103 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 705 987 - -
Gso6g2162 1103 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Gso6g2162 1103 ProSiteProfiles Leucine-rich repeat profile. 852 873 IPR001611 GO:0005515
Gso6g2162 1103 ProSitePatterns 'Homeobox' antennapedia-type protein signature. 826 831 IPR001827 GO:0003677|GO:0003700|GO:0006355
Gso6g2162 1103 Gene3D - 13 187 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2162 Gso-Chr6 41472550 41476674 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2162 16 776 WRKY Transcription Factor Family AT4G12020 28.679 1.50e-73 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2162 - - gmx:100778550 1812.35