Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2160 ATGGCTTCTTCTTCGTTTGAGTATGACGTGTTTGTGAGCTTCCGCGGTGAAGACACACGCAACAGCTTCACCGCTTTTCTTTTTGAAGCTCTGAAAAAACAAGGCATCGAGGCCTTCAAAGATGATAAAGATATCAGGAAAGGCGAATCCATAGCACCAGAGCTAATACGAGCCATTGAAGGGTCTCATGTTTTCCTTGTTGTCTTTTCCAAGGACTATGCTTCCTCAACTTGGTGCCTGCGTGAACTAGCACATATCTGGAATTGCTTTCAACCATCTACCAGACATCTTCTGCCTATTTTCTATGATGTTGATCCATCACAAGTGCGAAAACTGAGTGGAGACTATGAGAAAGCCTTTGCCCAACACCAACAAAGTTCCAGGTTCCAAGAGAAGGAAATTACAACATGGAGAGAAGTTCTGGAACGAGTAGCCAGTCTCTCTGGTTGGGATACCAGAAATGAGCGACAACCTGCAGTGATTGATAAAATTGTTCAGCAGATAAAAAGTATCGTGGGTTGCAAATTTTCTATTCCTGCATCTGATAATCTAGTTGGGATGGAATCTCATTTTGCTACATTATCAGAGCTAATATGTCTGGGGCCGGTTAATGATGATGTTCGAGTTGTTGGAATTACTGGGATGGGTGGAATAGGAAAGTCCGCTCTTGGTCAAGCTTTATATGAAAGAATCTCTCATCAATTTAATTCTTGTTGTTATATTGATGACGTAAGTAAACTTTATAAACGTGAAGGTAGATTAGGTGTACAAAAGGAATTACTTTCTCAATCTCTAAATGAAAGAAATCTAGAGATTCGTAATGTATCTGATGGAACACATCTGGCATGGAAGAGGCTACACAATGCAGAGGCACTTATAGTTCTTGACAATGTTGATCAAGATAAACAGCTTGATATGTTTACTGGGGGTAGAAATGATCTGTTACGTAAATGCCTAGGTAGAGGGAGCATAATTATTATAATTTCTAGGGATCAACAAATATTGAAGGCATATGGAGTAGATGATATTTACCAAGTGAAGCTATTGAATGACAATGATGCTCTTCGATTGTTTTGCAAAAAAGCATTTAAAAATAATTATACTATGAGTGATTTTGAAAAGTTGACTTCTGATTTACTATCACATTGTCAAGGTCTTCCCTTAGCAATTGAAGTACTGGGCTCATCTTTGTTTGATAAAGATGTTTTTCATTGGAGGAGTGCATTGGTCTCATTAAAAGAAAATAAAAGTAAAAGTATTATGGATGTGTTGCGAATAAGTTTTGATCAATTAGAGGATACACACAAGGAAATATTTCTAGATATTGCATGTTTCTTCAACGACGAATATGTGGAACATGTGAAGGAAGTTTTAGATTTTCGTGGATTTAATCCCGAATATGGCCTACAAGTTCTCGTTGATAAATCACTTATAACCATTGATGATGATGATTTTATTGGAATGCATGACTTGTTGTGCGATTTGAGCAAATCTATTGTTAGAGAAAAATCACCTAGGAAGCCATGGAAGTGGAGCAGGTTGTGGGATGTTAAAGATTTCCACAAAGTTATGTCAGATAATAAGGTAGCAGAAAATGTTGAGGTCATAATTCTTGAAGAAAAATCTGACATTCTTCGAACAATGAGATTCGATGCTCTATCAACAATGAGTAGCCTTAAGCTTTTCTATTTTACAAATTGGATCAAGATCAATTTTTCAGGAACACTTGCTAAGTTTTCCAATGAATTAGGATATTTTTATTGGGAAAAGTATCCTTTTGAGTGTTTGCCACCAAGTTTTGAACCGAACAAACTTGTTGAGTTGATTTTACTTAAAAGCAACATCAAACAACTTTGGGAAGACATAAAGCCTCTACCCAATTTGAGGCGTTTGGATCTCTCTGACTCCAAAAATCTAATTAAAATGCCATATATTGGAGATGCCCTATATCTTGAGAGTCTTGATCTCGAAGGATGTATACAACTCGAAGAGATCGGCCTGTCCATTGTTCTTTCACCAAAGCTTACTTCTCTGAATTTGAGAAATTGCAAAAGTCTTATCAAGTTGCCACCGTTTGGAGAGGACCTAATTCTTGAAGAGCTAGTTCTCGAAGGATGTCAAAAACTCAGACACATTGATCCATCCATCGGTCTTCTAAAAAAGCTCAGAAGATTGAATTTGAAAAACTGCAAAAATCTAGTAAGCTTACCCAATAGCATACTAGGCCTCAATTCTCTTGAAGATCTGAATCTCTCTGGCTGTTCAAAACTGTACAACACCGAGTTATTATATGAACTAAGGGATGCAGAGCAATTGAAGAAGATTGATATAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCTACTCCAGACAACATCAAAAATCAGTTAGTTGCTTAATGCCTTCCTCCCCAATATTTCCATGTATGAGTAAACTTGATCTAAGTTTCTGTAATTTAGTTGAAATCCCTGATGCTATTGGAATTATGAGTTGCTTAGAAAGGCTAGATTTAAGTGGTAACAATTTTGCTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGGTCTGTTTAAAGTTACAACATTGCAAGCAGTTGAAATCTTTGCCTGAGCTCCCTTCACGGATTGACTTTCCAGATGATGAATCGTATTTTGAAATAGGACAAACAGGATTATACATGTTTAACTGCCCAGAATTAGTTGATAGGGAACGCTGCACTGACATGGCTTTTTCATGGATGATGCAAAATTTGCAGTACCAGGTGGAATTGTTCGATTGTTACAAATATGGAACTGTTAGTCCAGGAAGTGAAATACCAAGGTGGTTCAATAATGAGCATGAGGGAAAATGA 2856 0.3729 MASSSFEYDVFVSFRGEDTRNSFTAFLFEALKKQGIEAFKDDKDIRKGESIAPELIRAIEGSHVFLVVFSKDYASSTWCLRELAHIWNCFQPSTRHLLPIFYDVDPSQVRKLSGDYEKAFAQHQQSSRFQEKEITTWREVLERVASLSGWDTRNERQPAVIDKIVQQIKSIVGCKFSIPASDNLVGMESHFATLSELICLGPVNDDVRVVGITGMGGIGKSALGQALYERISHQFNSCCYIDDVSKLYKREGRLGVQKELLSQSLNERNLEIRNVSDGTHLAWKRLHNAEALIVLDNVDQDKQLDMFTGGRNDLLRKCLGRGSIIIIISRDQQILKAYGVDDIYQVKLLNDNDALRLFCKKAFKNNYTMSDFEKLTSDLLSHCQGLPLAIEVLGSSLFDKDVFHWRSALVSLKENKSKSIMDVLRISFDQLEDTHKEIFLDIACFFNDEYVEHVKEVLDFRGFNPEYGLQVLVDKSLITIDDDDFIGMHDLLCDLSKSIVREKSPRKPWKWSRLWDVKDFHKVMSDNKVAENVEVIILEEKSDILRTMRFDALSTMSSLKLFYFTNWIKINFSGTLAKFSNELGYFYWEKYPFECLPPSFEPNKLVELILLKSNIKQLWEDIKPLPNLRRLDLSDSKNLIKMPYIGDALYLESLDLEGCIQLEEIGLSIVLSPKLTSLNLRNCKSLIKLPPFGEDLILEELVLEGCQKLRHIDPSIGLLKKLRRLNLKNCKNLVSLPNSILGLNSLEDLNLSGCSKLYNTELLYELRDAEQLKKIDIDGAPIHFQSTSSYSRQHQKSVSCLMPSSPIFPCMSKLDLSFCNLVEIPDAIGIMSCLERLDLSGNNFATLPNLKKLSKLVCLKLQHCKQLKSLPELPSRIDFPDDESYFEIGQTGLYMFNCPELVDRERCTDMAFSWMMQNLQYQVELFDCYKYGTVSPGSEIPRWFNNEHEGK* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2160 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 442 IPR027417 -
Gso6g2160 951 Gene3D Ribonuclease Inhibitor 697 778 IPR032675 -
Gso6g2160 951 Gene3D Ribonuclease Inhibitor 545 696 IPR032675 -
Gso6g2160 951 PRINTS Disease resistance protein signature 209 224 - -
Gso6g2160 951 PRINTS Disease resistance protein signature 285 299 - -
Gso6g2160 951 PRINTS Disease resistance protein signature 383 397 - -
Gso6g2160 951 PRINTS Disease resistance protein signature 623 639 - -
Gso6g2160 951 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Gso6g2160 951 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Gso6g2160 951 Gene3D - 176 343 IPR027417 -
Gso6g2160 951 Pfam TIR domain 8 170 IPR000157 GO:0007165
Gso6g2160 951 Pfam NB-ARC domain 205 421 IPR002182 GO:0043531
Gso6g2160 951 Gene3D - 348 432 IPR042197 -
Gso6g2160 951 Gene3D Ribonuclease Inhibitor 791 878 IPR032675 -
Gso6g2160 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 686 IPR044974 GO:0006952
Gso6g2160 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 686 888 IPR044974 GO:0006952
Gso6g2160 951 ProSiteProfiles Leucine-rich repeat profile. 833 854 IPR001611 GO:0005515
Gso6g2160 951 Gene3D - 5 175 IPR035897 -
Gso6g2160 951 SUPERFAMILY L domain-like 543 872 - -
Gso6g2160 951 SUPERFAMILY "Winged helix" DNA-binding domain 419 523 IPR036390 -
Gso6g2160 951 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 686 - -
Gso6g2160 951 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 686 888 - -
Gso6g2160 951 SMART till_3 7 147 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2160 Gso-Chr6 41401991 41406090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2160 3 757 WRKY Transcription Factor Family AT4G12020 28.878 1.08e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2160 - - gsj:114416974 1894.4