Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2158 ATGACGATTTTCACTCTCATACTTGCTATTGCCAACCTACTTTTGTTCCTCTCAAAAGCTTCCTCAATTGACACACTCACTCTGTCACAATCTCTCCCTGATGGTACCACCTTAGTTTCCAAAGATGAAACTTTTGAACTGGGTTTCTTTTCCCTAAGAAACTCCACAAACCGTTACCTCGGAATCTGGTTCAAAAACATCCCAGTAAAAACAGTTGTGTGGGTGGCTAACCGTGACTACCCTCTCAAAGACAATTCCACCAAGTTGATCATAACCAACGACGGAAACCTCGTCCTTCTCACAAAGAATAACAAAGTTCAGTGGTCAACAAACACAACAACAAAGGCCTCAAGGCCCATTTTGCAACTCTTAAACACGGGAAATTTAGTACTTCGCAACGATAATGAAGACAACAAGAACAATAATAAAAGCAGCAACAACAACAACGAAGATAGGTTCTTATGGCAAAGCTTTGACTACCCTAGTGACACCTTGTTACCAGGAATGAAGCTTGGATGGTACAGAAAAACCGGTCTCAATCGACGTGTAATCGCTTGGAAGAACTGGGATGATCCTTCTCCTGGGAACTTCTCTTGGGGCATCACATTTGACAGCAACCCTGAAATGGTTCTTTGGAAAGGATCATTCAAGTACCATAGGAGTGGACCTTGGAATGGTATTCGGTTTAGTGGTGCATTTGGTGGCTCAAATAGGTTAAGCACTCACCCTCTTTTTGTTTACAAATTAATAAACAACGATGATGAAGTTTATTACTCATACAGCCTCACCAACAAGTCCGTGATTTCAATAGTTGTCATGAACCAAACCCTTCTCCGTCGCCAACGCAACATTTGGATCCCCGAAAATGGAACATGGAGGTTGTTCCAAACCGCACCGAGAGACATTTGTGACACTTATAATCCGTGTGGCTCTTACGCGAATTGTATGGTTGATTCATCGCCGGTGTGTCAGTGTTTAGAAGGATTCAAACCGAAATCTTTGGATACAATGGAACAAGGGTGTGTGAGAAGTGAACCGTGGAGCTGCAAGGTGGAAGGGAGAGATGGATTTAGAAAATTTGTTGGGTTGAAGTTTCCGGATACTACACATTCTTGGATTAATAAAAGTATGACACTCGAGGAATGCAAGGTTAAATGTTGGGAAAATTGTTCGTGCACAGCTTATGCAAACTTGGACATAAGAGGAGCAGGAAGTGGGTGTTCCATTTGGTTTGGTGATCTTATTGATTTGAAAGTTGTTTCACAAAGTGGACAATATCTTTATATTCGAATGGCAGATTCACAGACAGATGCTAAAGATGCCCATAAGAAGAAGGAACTGTTGTTGATAGGTACGATCGTGCCTCCTATTGTTCTCGTGATACTATTGGCAATCTTCTACTCTTACAAGAGAAAACGGAAGTATGAAGAAGAAAACGTGTCGGTAGTAAAGAAAGATGAAGCTGGTGGACAAGAACATAGCATGGAACTACCATTGTTTGATCTTGCTACATTAGTTAATGCCACCAACAACTTCTCAACTGACAACAAACTAGGCCAAGGTGGGTTCGGGCCTGTATACAAGGGTGTATTAGCAGGAGGACAAGAAATTGCTGTCAAAAGGTTATCGAGGAGTTCTGGACAAGGATTAACAGAATTTAAGAATGAAGTTATATTGTGTGCAAAACTTCAGCACCGAAATCTTGTTAAAGTTCTTGGTTGTTGCATTGAAGAAGAGGAGAAAATGCTTCTTTATGAATACATGCCCAACAAAAGCCTAGATTCCTTTCTTTTTGATTCAACTAAAAGCAAGATTTTGGATTGGTCTAAGCGCTTCCACATCTTATGTGCGACTGCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGGATAATACACCGAGATTTAAAAGCAAGTAATATTTTATTAGATAACAACTTGAACCCGAAAATTTCAGATTTTGGCCTGGCAAGAATGTGTGGGGGTGATCAAATTGAAGGAAACACAAACAGGGTCGTTGGAACATATGGCTATATGGCACCTGAATATGTTATTCATGGATTATTCTCCACAAAATCTGATGTATTTAGTTTTGGTATATTGTTGCTGGAAATCATAAGTGGAAAGAAAAACAGAGAGATTACCTATCCATACCATAGTCATAATCTTATTGGGCATGCATGGAAGTTGTGGAAAGAAGGCATACCAGGGGAATTGATTGATAATTGTTTGCAGGACTCGTGTATCATATCAGAAGCCTTACGATGCATTCACATTGGTCTTTTATGCCTACAACGTCAACCTAATGATCGGCCAAACATGGCATCTGTAGTTGTTATGCTGAGTAGTGATAATGAATTAACCCAACCAAAGGAACCTGGTTTCTTAATAGATAGGGTTTTAATTGAAGAAGAATCACAATTTAGAAGCCAAACTTCTTCTTCAACCAATGGAGTAACCATTTCAATCCTGGATGCAAGATAA 2490 0.3996 MTIFTLILAIANLLLFLSKASSIDTLTLSQSLPDGTTLVSKDETFELGFFSLRNSTNRYLGIWFKNIPVKTVVWVANRDYPLKDNSTKLIITNDGNLVLLTKNNKVQWSTNTTTKASRPILQLLNTGNLVLRNDNEDNKNNNKSSNNNNEDRFLWQSFDYPSDTLLPGMKLGWYRKTGLNRRVIAWKNWDDPSPGNFSWGITFDSNPEMVLWKGSFKYHRSGPWNGIRFSGAFGGSNRLSTHPLFVYKLINNDDEVYYSYSLTNKSVISIVVMNQTLLRRQRNIWIPENGTWRLFQTAPRDICDTYNPCGSYANCMVDSSPVCQCLEGFKPKSLDTMEQGCVRSEPWSCKVEGRDGFRKFVGLKFPDTTHSWINKSMTLEECKVKCWENCSCTAYANLDIRGAGSGCSIWFGDLIDLKVVSQSGQYLYIRMADSQTDAKDAHKKKELLLIGTIVPPIVLVILLAIFYSYKRKRKYEEENVSVVKKDEAGGQEHSMELPLFDLATLVNATNNFSTDNKLGQGGFGPVYKGVLAGGQEIAVKRLSRSSGQGLTEFKNEVILCAKLQHRNLVKVLGCCIEEEEKMLLYEYMPNKSLDSFLFDSTKSKILDWSKRFHILCATARGLLYLHQDSRLRIIHRDLKASNILLDNNLNPKISDFGLARMCGGDQIEGNTNRVVGTYGYMAPEYVIHGLFSTKSDVFSFGILLLEIISGKKNREITYPYHSHNLIGHAWKLWKEGIPGELIDNCLQDSCIISEALRCIHIGLLCLQRQPNDRPNMASVVVMLSSDNELTQPKEPGFLIDRVLIEEESQFRSQTSSSTNGVTISILDAR* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2158 829 Pfam PAN-like domain 349 417 IPR003609 -
Gso6g2158 829 Pfam D-mannose binding lectin 71 187 IPR001480 -
Gso6g2158 829 SMART blect_4 29 161 IPR001480 -
Gso6g2158 829 Gene3D Transferase(Phosphotransferase) domain 1 588 795 - -
Gso6g2158 829 Gene3D Hepatocyte Growth Factor 348 429 - -
Gso6g2158 829 SMART ntp_6 352 431 IPR003609 -
Gso6g2158 829 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Gso6g2158 829 SUPERFAMILY Protein kinase-like (PK-like) 494 795 IPR011009 -
Gso6g2158 829 Gene3D Phosphorylase Kinase; domain 1 470 587 - -
Gso6g2158 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 192 IPR036426 -
Gso6g2158 829 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672|GO:0006468
Gso6g2158 829 CDD PAN_AP_plant 348 432 - -
Gso6g2158 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Gso6g2158 829 ProSiteProfiles PAN/Apple domain profile. 349 432 IPR003609 -
Gso6g2158 829 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 31 822 - -
Gso6g2158 829 SMART serkin_6 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2158 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Gso6g2158 829 Gene3D - 19 158 IPR036426 -
Gso6g2158 829 ProSiteProfiles Protein kinase domain profile. 512 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2158 829 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 822 - -
Gso6g2158 829 CDD B_lectin 29 161 IPR001480 -
Gso6g2158 829 CDD STKc_IRAK 518 783 - -
Gso6g2158 829 Pfam S-locus glycoprotein domain 220 333 IPR000858 GO:0048544
Gso6g2158 829 Pfam Domain of unknown function (DUF3403) 784 829 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2158 Gso-Chr6 41384537 41388607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2158 447 799 Receptor kinase-like Gene Family AT4G23230 53.107 3.94e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2158 PK_Tyr_Ser-Thr 9.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2158 - - gmx:100794112 1654.8