Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2157 ATGGCCATTCAACTAACTTTCATGCTTCTCATAGCCATCCTACTTCTTCTCTTCTCATCCAAAATTTCCTCTGAAACGGACACACTCACCCAGTTTCAGCCACTTTCCGATGGAACCACCTTGGTTTCCAAAGAAGGAACCTTTGAGCTGGGTTTCTTCAGCCCAGGTAGCTCCACCAACCGCTACCTAGGAATCTGGTTCAAAAACATCCCAGTAAAAACCATCGTTTGGGTTGCCAACCGCGACAACCCAATCAAAAGCAACACCAACACCAAGTTAACCATAACCAAAGATGGAAACCTCGTCCTTCTCACCGTGAACGACACCGTCCACTGGACAACAAATGCAACAGAAAAATCATTCAACGCCGTAGCGCAGCTTTTGGACACAGGCAACTTGGTCCTAATAGATGAGAAGGACAACAACTCCCAAAACTATTTGTGGCAGAGCTTTGACTATCCTACGGATACACTTTTACCAGGAATGAAGATAGGATGGGAAGTAGCAACGGGTCTCAACAGGTACCTCACTTCTTGGAACAATTGGGAAGACCCATCTTCTGGTCACTTCGCTTATGGCGTGGCGAGAAGCAACATCCCCGAAATGCAAATATGGAATGGCTCATCGGTGTTCTACCGAAGTGGCCCTTGGAGCGGCTTTCGATTCAGCGCCACACCGACATTGAAACGCCGTTCGTTGGTGAATATCAATTTTGTGGACACCACCGAGGAGAGTTATTACCAACTTTTCCCGCGGAATCGCTCGCTGGTTATAAGAACGGTTGTTAACCAAACCGTTTTCGCTCTACAACGCTTCATTTGGGATGAAGTAACTCAAAACTGGAAGCTTGATTTGCTCATTCCGAGAGATGATTTTTGCGGCTACAACCAATGTGGCTCTTTCGGGTTCTGCACGGAGAAGGATAACTCCTCAGTGTGCGGGTGTTTGCGGGGGTTTGAGCCAAAATCGCCACAAAACCGGGGTGCAAAGAATAGCACTCATCAAGGGTGTGTGCAAAGTAGTAAAAGTTGGATGTGTAGGGAGAAAAATATTGACGGTTTTGTTAAAATGAGTAACATGAAGGTGGCAGATACAAACACATCATGGATGAATAGAAGTATGACAATTGAGGAATGCAAGGAAAAGTGCTGGGAAAATTGTTCTTGTACAGCTTATGCTAATTCAGACATCACTGAGAGCGGAAGTGGATTTAGCGGTTGCATCCTTTGGTTCAGTGATTTACTGGATTTGAGGCAGTTTCCAGATGGAGGGCAAGATCTATATGTTAGAGTGGATATTTCCCAAATAGATAAAGATGCTAAAGATGGATCAAAGATAGCGGTGGTTGTGGTCGCAAGCATTGTTCCGTCAATTATTGCTATACTTGTATTCACGTTCTTTTACCGGAGAAGTAAGACCAAATTCCGAAGCAAAGTGATCATCAAGACAAAGGGAAAAATAAATGAGAGCGAAGAAGAAGATCTAGAGCTACCTTTGTTTGATTTTGAGACAATAGCATTTGCTACTAGTGACTTCTCAAGTGACAACATGCTTGGGCAAGGTGGTTTTGGTCCTGTATACAAAGGCACGTTACCAGACGGACATAATATTGCAGTCAAAAGGCTTTCAGATACATCGGCACAAGGATTAGATGAATTTAAGAACGAGGTTATATTTTGTTCAAAACTTCAACATCGAAATCTTGTCAAAGTCCTTGGCTATTGCATTGAAGAGCAAGAAAAATTACTCATCTATGAATACATGCACAACAAAAGCCTAAACTTCTTTCTTTTTGATACTTCTCAAAGCAAACTTCTAGATTGGTCTAAGCGGTTAAACATTATAAGTGGAATTGCTCGAGGACTTCTTTATCTTCACCAAGACTCTAGATTGAGGATCATACATAGAGATTTAAAATCAAGTAATATTTTGTTAGATGATGATATGAATCCAAAAATTTCTGATTTTGGAATAGCTCGAGTGTGTAGAGGAGATATAATTGAAGGGAATACAAGCAGAGTTGTTGGTACATATGGTTATATGGCACCTGAATATGCAATTGGTGGACTATTCTCCATCAAATCTGATGTCTATAGTTTTGGTGTTATATTGCTTGAGGTTTTAAGCGGAAAGAAAAATAAAGGATTTTCCTTTTCAAGTCAGAACTATAATCTTATTGCACATGCATGGTGGTGTTGGAAAGAGTGCAGCCCGATGGAATTTATCGATACTTGTTTAAGGGACTCATACATTCAGTCAGAGGCCTTACGATACATTCATATTGGTCTTTTATGTGTGCAACATCAACCTAATGATAGACCGAATATGACAGCTGTAGTTACAATGTTAACTAGTGAAAGTGCTTTACCACATCCAAAAAAGCCTATTTTCTTTTTAGAAAGGGTTTTAGTTGAAGAAGATTTTGGGCAAAATATGTATAATCAAACCAATGAAGTAACTATGTCAGAGATGCAACCCAGATAA 2484 0.4094 MAIQLTFMLLIAILLLLFSSKISSETDTLTQFQPLSDGTTLVSKEGTFELGFFSPGSSTNRYLGIWFKNIPVKTIVWVANRDNPIKSNTNTKLTITKDGNLVLLTVNDTVHWTTNATEKSFNAVAQLLDTGNLVLIDEKDNNSQNYLWQSFDYPTDTLLPGMKIGWEVATGLNRYLTSWNNWEDPSSGHFAYGVARSNIPEMQIWNGSSVFYRSGPWSGFRFSATPTLKRRSLVNINFVDTTEESYYQLFPRNRSLVIRTVVNQTVFALQRFIWDEVTQNWKLDLLIPRDDFCGYNQCGSFGFCTEKDNSSVCGCLRGFEPKSPQNRGAKNSTHQGCVQSSKSWMCREKNIDGFVKMSNMKVADTNTSWMNRSMTIEECKEKCWENCSCTAYANSDITESGSGFSGCILWFSDLLDLRQFPDGGQDLYVRVDISQIDKDAKDGSKIAVVVVASIVPSIIAILVFTFFYRRSKTKFRSKVIIKTKGKINESEEEDLELPLFDFETIAFATSDFSSDNMLGQGGFGPVYKGTLPDGHNIAVKRLSDTSAQGLDEFKNEVIFCSKLQHRNLVKVLGYCIEEQEKLLIYEYMHNKSLNFFLFDTSQSKLLDWSKRLNIISGIARGLLYLHQDSRLRIIHRDLKSSNILLDDDMNPKISDFGIARVCRGDIIEGNTSRVVGTYGYMAPEYAIGGLFSIKSDVYSFGVILLEVLSGKKNKGFSFSSQNYNLIAHAWWCWKECSPMEFIDTCLRDSYIQSEALRYIHIGLLCVQHQPNDRPNMTAVVTMLTSESALPHPKKPIFFLERVLVEEDFGQNMYNQTNEVTMSEMQPR* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2157 827 Pfam D-mannose binding lectin 74 179 IPR001480 -
Gso6g2157 827 Gene3D - 20 151 IPR036426 -
Gso6g2157 827 SMART serkin_6 512 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2157 827 ProSiteProfiles Protein kinase domain profile. 512 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2157 827 CDD STKc_IRAK 518 784 - -
Gso6g2157 827 Gene3D Transferase(Phosphotransferase) domain 1 588 791 - -
Gso6g2157 827 Pfam Protein tyrosine and serine/threonine kinase 515 783 IPR001245 GO:0004672|GO:0006468
Gso6g2157 827 Gene3D Phosphorylase Kinase; domain 1 472 587 - -
Gso6g2157 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 185 IPR036426 -
Gso6g2157 827 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Gso6g2157 827 Pfam PAN-like domain 346 417 IPR003609 -
Gso6g2157 827 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 825 - -
Gso6g2157 827 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 825 - -
Gso6g2157 827 ProSiteProfiles PAN/Apple domain profile. 346 432 IPR003609 -
Gso6g2157 827 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544
Gso6g2157 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Gso6g2157 827 SUPERFAMILY Protein kinase-like (PK-like) 494 783 IPR011009 -
Gso6g2157 827 CDD B_lectin 33 154 IPR001480 -
Gso6g2157 827 CDD PAN_AP_plant 347 431 - -
Gso6g2157 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Gso6g2157 827 SMART blect_4 32 154 IPR001480 -
Gso6g2157 827 SMART ntp_6 349 431 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2157 Gso-Chr6 41345510 41351034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2157 447 798 Receptor kinase-like Gene Family AT4G23190 51.667 5.95e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2157 PK_Tyr_Ser-Thr 6.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2157 - - gmx:100792537 1639.78