Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2153 ATGACCATTCCACTACCGTTCATGCTTGTCATGATCATAGCCAACCTGCTTTTCCTCTCATCCAAAATTTCTTCAGAAACCAACACCATCTCCCAGCTCCAGCCACTCCCCGATGGAACTACCTTGGTTTCCGAAGATGGAACCTTTGAGCTGGGTTTATTCAGCCCAGGTAGTTCCACAAACCGCTACCTAGGAATCTGGTTCAAAACCATCAAACCAAAAACCGTAGTTTGGGTTGCCAACCGCGACAACCCAATCAACAACACCAATTCCACCACTAAGTTAACCATAACAAAAGAAGGAAACCTCGTACTTCTCAACCAAAACAACAACATTAGTTGGTCAACAAACACAACAACAAAAGCCACCAACGTTGTGGCACAGCTCTTGGACACAGGCAACTTGGTCCTAAGAGACGAGGAAGACAACAATCCTCCAAAATTCTTGTGGCAGAGCTTCGACCATCCTTCGGATACGCTTTTACCAGGAATGAAACTAGGTTGGGAAAAAGTAACAACAAAGGGTAGTCTTAATCTTAACAGGTACCTCACTGCATGGAACAATTGGGAAGACCCATCTTCTGGTCACTTCACTTACGGCTTCAGCAGAAGCACCATTCCCGAAAAGCAAATGTGGAACGGGTCGTCGTTGTTCTTCCGAAACGGCCCTTGGAACGGAATTCGCTTCAGCGGCACACCCTCGTTGAAACACCGTCCGTTATTCGGTCTCACTTTCGTGTACAACGCGGACGAGTGCTATTTCCAGTTCTACCCCAAGAACAGTTCGTTAATTTCCAGAATTGTCCTCAACCAAACCGATTACGCTCTTCGGCGTTTCGTGTGGGTCGAGGAAAGTCAAAAGTGGAAGCTGTACATGACTGTTCCCGGAGAATATTGCGACGAGTATAACCACTGTGGCTCTTTTGGGTACTGTGCGATGTTGGGTAAGTTCCCATCGTGCAAGTGTTTGCTTGGATTTGAGCCAAAATCGCCGCAAAACTGGGTCGCAAGTAACTGGAGTCAAGGGTGTGTGCTGAGTAGTAAAAGATGGAGGTGTAGGGAGAAAGATAAAGATGGTTTTGCATTGTTTAGTAACATGAAGGTTCCAGACACCAACACATCTTGGATTAGTAGATATAGTAATATGACACTTGAGAAATGCAAGGAAAAGTGTTGGGAGAATTGTTCGTGTACGGCTTATGGTAGCTCTGACATCACTGGAAAGGGAAGTGGTTGTATCCTGTGGTTCGGTGATCTATTGGACTTGAGACTGCTTCCTAATGCAGGGCAAGATATTTACGTTAGAGTGGATATCTCCCAAATAGGTGCAAAAGGTGGTTCTACTTCTAGGAAAGTGCTTGTTGTGGTCACAGGCATTGTTTCATCTATTATTGCTATTCTTGTGATATTCGTGCTCGTTTACTGCAACAAGTTTAGAAGCAAAGTGGGAACAGATGTCATGAAGACAAAAGTAAAAATAAATGATAGCAATGAAGAAGAATTGGAACTACCTTTGTTTGACTTTGATACAATAGCATTTGCTACTAATGATTTTTCAAGTGACAACAAGCTTGGCCAAGGTGGTTTTGGTCCTGTATATAAAGGCACATTACCAGATGGACAAGATATTGCAGTCAAAAGGCTTTCACAAACATCTACACAAGGATTAACAGAATTTAAGAATGAAGTTATATTTTGTTCAAAACTTCAACATCGAAATCTTGTTAAAGTTCTTGGTTGTTGCATCAATGAGCAGGAGAAATTACTCATCTATGAGTACATGCCGAACAAAAGCCTAGACTTCTTTCTTTTTGATTCTTCTCAAAGCAAACTTTTAGATTGGTCCAAGCGATTGAACATAATAAATGGAATTGCTCGAGGACTTCTTTATCTTCACCAAGATTCTAGATTGAGGATCATACACAGAGATTTAAAAGCAAGTAATATTTTGCTAGATAATGACATGAATCCTAAAATTTCTGATTTTGGGTTAGCACGAATGTGCAGAGGTGATCAAAATGAAGGCAATACAAGTAGAGTTGTTGGTACATATGGTTATATGGCACCTGAATATGCAATTGATGGAGTATTCTCCATCAAATCTGATGTCTATAGCTTTGGCATTTTACTACTAGAGGCTTTAAGCGGAAAGAAAAATAAAGGGATTTCCTACTCAAATAGCAGCTACAATCTTATTGGACATGCATGGAGGTTATGGAAAGAGTGCACCCCAAAGGAATTCATTGATACTTGTTTGGGGGATTCATACGTTATATCTGAAGCCTTGCGATGCATTCATATTGGTCTTTTATGTGTGCAACATCTACCTGATGACAGACCAAATATGACATCTGTGGTTGTAATGTTGTCTAGTGAAAGTGTTTTACCACAACCAAAAGAGCCTGTTTTCTTAACAGAAAAAGTTTCAGTTGAGGAACATTTTGGGCAAAAGATGTACTATTCAACCAATGAAGTAACTATCTCAAAGTTGGAACCAAGATAA 2502 0.4101 MTIPLPFMLVMIIANLLFLSSKISSETNTISQLQPLPDGTTLVSEDGTFELGLFSPGSSTNRYLGIWFKTIKPKTVVWVANRDNPINNTNSTTKLTITKEGNLVLLNQNNNISWSTNTTTKATNVVAQLLDTGNLVLRDEEDNNPPKFLWQSFDHPSDTLLPGMKLGWEKVTTKGSLNLNRYLTAWNNWEDPSSGHFTYGFSRSTIPEKQMWNGSSLFFRNGPWNGIRFSGTPSLKHRPLFGLTFVYNADECYFQFYPKNSSLISRIVLNQTDYALRRFVWVEESQKWKLYMTVPGEYCDEYNHCGSFGYCAMLGKFPSCKCLLGFEPKSPQNWVASNWSQGCVLSSKRWRCREKDKDGFALFSNMKVPDTNTSWISRYSNMTLEKCKEKCWENCSCTAYGSSDITGKGSGCILWFGDLLDLRLLPNAGQDIYVRVDISQIGAKGGSTSRKVLVVVTGIVSSIIAILVIFVLVYCNKFRSKVGTDVMKTKVKINDSNEEELELPLFDFDTIAFATNDFSSDNKLGQGGFGPVYKGTLPDGQDIAVKRLSQTSTQGLTEFKNEVIFCSKLQHRNLVKVLGCCINEQEKLLIYEYMPNKSLDFFLFDSSQSKLLDWSKRLNIINGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCRGDQNEGNTSRVVGTYGYMAPEYAIDGVFSIKSDVYSFGILLLEALSGKKNKGISYSNSSYNLIGHAWRLWKECTPKEFIDTCLGDSYVISEALRCIHIGLLCVQHLPDDRPNMTSVVVMLSSESVLPQPKEPVFLTEKVSVEEHFGQKMYYSTNEVTISKLEPR* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2153 833 SMART serkin_6 518 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2153 833 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Gso6g2153 833 Pfam D-mannose binding lectin 75 186 IPR001480 -
Gso6g2153 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 191 IPR036426 -
Gso6g2153 833 ProSiteProfiles PAN/Apple domain profile. 352 437 IPR003609 -
Gso6g2153 833 CDD STKc_IRAK 524 789 - -
Gso6g2153 833 CDD PAN_AP_plant 353 436 - -
Gso6g2153 833 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 831 - -
Gso6g2153 833 CDD B_lectin 34 156 IPR001480 -
Gso6g2153 833 PIRSF SRK 1 833 IPR024171 GO:0004674
Gso6g2153 833 Gene3D Phosphorylase Kinase; domain 1 479 593 - -
Gso6g2153 833 ProSiteProfiles Protein kinase domain profile. 518 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2153 833 Gene3D Transferase(Phosphotransferase) domain 1 594 799 - -
Gso6g2153 833 SMART blect_4 33 156 IPR001480 -
Gso6g2153 833 Pfam Domain of unknown function (DUF3403) 790 833 IPR021820 GO:0004674
Gso6g2153 833 SMART ntp_6 355 436 IPR003609 -
Gso6g2153 833 Pfam S-locus glycoprotein domain 219 330 IPR000858 GO:0048544
Gso6g2153 833 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 831 - -
Gso6g2153 833 Gene3D - 21 153 IPR036426 -
Gso6g2153 833 Pfam Protein tyrosine and serine/threonine kinase 521 786 IPR001245 GO:0004672|GO:0006468
Gso6g2153 833 SUPERFAMILY Protein kinase-like (PK-like) 495 789 IPR011009 -
Gso6g2153 833 Pfam PAN-like domain 352 422 IPR003609 -
Gso6g2153 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2153 Gso-Chr6 41244214 41250260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2153 454 804 Receptor kinase-like Gene Family AT4G23190 53.239 1.49e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2153 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2153 - - gmx:100792537 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2153 6 41244214 41250260 Gso12g1764 12 41240587 41241671 PCT