Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2144 ATGTTATCATTGTTATGTATTTGCTTATTATTATTTTCCTACTTCTCAGGAAATTGCACTTCACTAGACAGTTTAGCAGTAAATCAATCCATCCAAGATGGTGGGAATGAGACTTTGGTTTCAGCAGGTGGAATTACTGAAGTGGGTTTCTTTAGCCCAGCAAAAACAACAAGGCGATACTTGGGTATATGGTTCAGAAATGTTACCCCTTTAACAGTGGTGTGGGTTGCTAACCGAAATACACCTCTTGAGAATAACTCAGGAGTTTTGAAACTCAACCAGAAAGGGATTCTTGTGCTTCTCAATGACAAAAACAGCACCATTTGGTCATCCAAGATATCAAGCAAAGCTGGGAATAACCCAATTGCGCATCCGTTGGATTCGGGAAATTTTGTGGTGAAAATTGGACAGCAACCTAACAAGGGTACCGTTTTATGGCAGAGTTTTGATTATCCAGGTGATACACATATTCCGGGAATGAAAATAGGATGGAACATAGAAACTGGTCTAGAAAGATCTATATCATCTTGGAAAAGTGATGAGGATCCTGCGAAGGGAGAGTATGTTGTAAAAGTGGATCTTCGAGGATATCCTCAAGTATTTGTATTCAAAGGATCCTTGATAAAGTTCAGAGTAGGGCCATGGAATGGCCAGTCTTTGGCTGGATTACCTGTTAAAATTCCATACTGTTCACAAAAATTTGTATTGAATGAAAAAGAGGTGTATTATGGGTACGACCTTCTTGATAGTTTGGAATTCATCAGCATATTTAAACTTACCCCTTCAGGCACGGCACAGAGAAGTTTTTGGAGAGCTCAAACAAACACCAGGCAAGTCCTAACAATTGAGGATCAAGATCAATGTGAAAATTATGCCTTTTGTGGTGAAAATTCTATATGCAGTTATGATGGTAACCGTCCAACTTGTGAATGCCTGAGAGGTTATTTTCCTAAGTCTCCGGATCAGTGGAATATGTCAATTTCACCAAACGGCTGTGTTCCAAGGAATAAATCTAACTGCCAAAACAGTTATACAGATGGCTTCTTCAAGTACGCACACATGAAAATGCCAGACACATCTTCTTCGTGGTTTAATACAACCATGAACCTTGATGAATGTCGGAAGTCATGTCTTAAAAACTGTTCTTGTACTGCATATGCAAATTTAGATATTCGTGGTGGTGGAAGTGGCTGTCTACTTTGGTTTAATAATACAGTTGACATGAGGTATTTCCCTAAATTTGGACAAGACATTTATATCAGAGTCCCTGCTTCAGAATTAGATAATGGTGGCCCTGGAATCAAGAAAAAGATAGTAGTAATCACTGCTGGTGTGACAGTTTTTGGACTTATCATCACATGTTTCTGCATACTGATAGTTAAAAATCCAGTGGCAGGAAGATTATATTCTCATATCGGACGATTTCAATGGCGGCAAGAATATTTTATCTTGAGAAGGGAAGACATGGATCTGCCAACCTTTGAGTTGTCAGCCATTGCTAAAGCCACTGATAATTTTTCTAGCAGAAATAAACTAGGGGAAGGTGGATTTGGGCCAGTATACAAGGGTACACTAATAGATGGGCAAGAGGTAGCCGTAAAACGACACTCAGAAATGTCTGATCAAGGACTGGAGGAGTTTAAAAATGAAGTTGTGTTGATTGCAAAACTTCAGCACCGTAATCTTGTGAAACTTCTAGGTTGCTGTATTCATGGAGAGGAAAAATTGTTGATCTATGAATGCATGGCCAACAAGAGCTTAGACTGCTTCATCTTTGATGAAACTAGAAGTAAGCTCTTATCCTGGAATCAACGTTTTCACATTATTGTTGGCATCGCTCGGGGGCTTCTCTATCTTCACCAAGACTCTAGACTGAGAATTATTCACAGAGATTTGAAAACCAGCAATATCCTACTCGATGCGCATATGAATCCTAAAATCTCAGACTTTGGCATGGCTCGGACTTTTGGCTGGGATCAAAGTCAAGCCAAAACCAGAAAAGTGGTCGGAACATATGGTTACATGCCTCCAGAGTATGCTGTGCATGGTTATTACTCTGTGAAATCAGATGTCTTTGGTTTTGGTGTGATAGTACTAGAGATAGTTAGTGGAAACAAGAACAGGGGATTTTCTGACCCGGAACACTCTCTTAATCTTCTTGGACATGCATGGAGACTTTGGACAGAAGACAGGCCATTGGAGCTGATAGATATAAACTTAAGTGAAAGATGCATTCCTTTTGAAGTCTTAAGATGCATACATGTGGGTTTGTTGTGTGTACAACAAAAACCACAAGATAGGCCGGATATGTCTTCTGTCATTCCTATGCTGAATGGTGAGAAATTATTGCCTCTGCCAAAGGCTCCTGGATTTTATACAGGAAACTGTACTCCTGAATTAGTATCTTCATCTAAAACTTGTAATCCATTATCACAAAATGAGATATCCCTTACAATTTTCGAGGCAAGATAG 2472 0.3944 MLSLLCICLLLFSYFSGNCTSLDSLAVNQSIQDGGNETLVSAGGITEVGFFSPAKTTRRYLGIWFRNVTPLTVVWVANRNTPLENNSGVLKLNQKGILVLLNDKNSTIWSSKISSKAGNNPIAHPLDSGNFVVKIGQQPNKGTVLWQSFDYPGDTHIPGMKIGWNIETGLERSISSWKSDEDPAKGEYVVKVDLRGYPQVFVFKGSLIKFRVGPWNGQSLAGLPVKIPYCSQKFVLNEKEVYYGYDLLDSLEFISIFKLTPSGTAQRSFWRAQTNTRQVLTIEDQDQCENYAFCGENSICSYDGNRPTCECLRGYFPKSPDQWNMSISPNGCVPRNKSNCQNSYTDGFFKYAHMKMPDTSSSWFNTTMNLDECRKSCLKNCSCTAYANLDIRGGGSGCLLWFNNTVDMRYFPKFGQDIYIRVPASELDNGGPGIKKKIVVITAGVTVFGLIITCFCILIVKNPVAGRLYSHIGRFQWRQEYFILRREDMDLPTFELSAIAKATDNFSSRNKLGEGGFGPVYKGTLIDGQEVAVKRHSEMSDQGLEEFKNEVVLIAKLQHRNLVKLLGCCIHGEEKLLIYECMANKSLDCFIFDETRSKLLSWNQRFHIIVGIARGLLYLHQDSRLRIIHRDLKTSNILLDAHMNPKISDFGMARTFGWDQSQAKTRKVVGTYGYMPPEYAVHGYYSVKSDVFGFGVIVLEIVSGNKNRGFSDPEHSLNLLGHAWRLWTEDRPLELIDINLSERCIPFEVLRCIHVGLLCVQQKPQDRPDMSSVIPMLNGEKLLPLPKAPGFYTGNCTPELVSSSKTCNPLSQNEISLTIFEAR* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2144 823 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Gso6g2144 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Gso6g2144 823 SUPERFAMILY Protein kinase-like (PK-like) 489 777 IPR011009 -
Gso6g2144 823 SMART blect_4 30 152 IPR001480 -
Gso6g2144 823 CDD PAN_AP_plant 337 423 - -
Gso6g2144 823 Pfam PAN-like domain 340 408 IPR003609 -
Gso6g2144 823 Gene3D Phosphorylase Kinase; domain 1 474 580 - -
Gso6g2144 823 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 14 821 - -
Gso6g2144 823 Pfam Protein tyrosine and serine/threonine kinase 509 774 IPR001245 GO:0004672|GO:0006468
Gso6g2144 823 Gene3D Hepatocyte Growth Factor 339 418 - -
Gso6g2144 823 SMART ntp_6 343 422 IPR003609 -
Gso6g2144 823 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2144 823 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Gso6g2144 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 183 IPR036426 -
Gso6g2144 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gso6g2144 823 CDD STKc_IRAK 512 779 - -
Gso6g2144 823 CDD B_lectin 34 152 IPR001480 -
Gso6g2144 823 Gene3D - 19 149 IPR036426 -
Gso6g2144 823 Gene3D Transferase(Phosphotransferase) domain 1 582 782 - -
Gso6g2144 823 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Gso6g2144 823 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 821 - -
Gso6g2144 823 Pfam D-mannose binding lectin 72 178 IPR001480 -
Gso6g2144 823 ProSiteProfiles EGF-like domain profile. 284 321 IPR000742 -
Gso6g2144 823 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2144 Gso-Chr6 40965669 40969791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2144 494 823 Receptor kinase-like Gene Family AT4G05200 54.971 8.49e-123 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2144 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2144 - - gmx:100786000 1420.99