Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2142 ATGTTACTTATTTGGTTCTTGCTAATCTCTTACACAACTACAACTTCAACTTCAACTTTGCGATCCGTAAATCATTTAGCAGTGAGTCAATCCATTCGAGATGGTGAGACTTTGGTTTCAGCTGGTGGAATTACTGAACTGGGTTTCTTCAGTCCCGGAAATTCGACAAGACGATACTTGGCTATATGGTACACAAATGTATCCCCTTACACAGTGGTATGGGTGGCTAACCGAAACACACCTCTTCAGAATAACTCAGGAGTTCTCAAACTCAATGAGAAAGGGATTCTTGAGCTTCTCAGTCCTACAAATGGCACCATTTGGTCATCCAATATATCAAGCAAAGCAGTGAATAATCCAGTTGCTTATCTTTTGGATTCGGGAAATTTTGTAGTGAAAAATGGACATGAAACTAACGAGAACAGCTTCTTGTGGCAGAGTTTTGATTATCCAACTGATACATTGATGTCAGGAATGAAGCTTGGGTGGAACATAGAGACTGGTCTAGAAAGATATCTTACATCTTGGAAAAGTGTTGAAGATCCAGCTGAGGGAGAATATACTTCAAAAATTGAACTTACAGGATATCCACAATTAGTACGGTTCAAGGGACCTGATATAAGAACCAGAATAGGATCATGGAATGGCTTGTATCTAGTTGGATATCCAGGTCCAATTCATGAAACATCACAAAAATTTGTGATCAATGAAAAAGAGGTGTATTATGAGTACGACGTTGTTGCTCGATGGGCCTTCAGTGTATATAAACTGACTCCTTCAGGCACAGGGCAGTCTTTATATTGGTCAAGTGAAAGAACCACAAGGAAAATCGCCTCAACTGGGGAGGAAGATCAATGCGAGAATTATACCTTTTGTGGAGCAAATTCTATATGCAATTTTGATGGTAACCGACCAACTTGTGAATGCTTGAGAGGTTATGTTCCCAAGTCTCCTGATCAATGGAATATGTCAGTCTGGTCCGATGGTTGTGTTCCAAGGAATAAATCAAATTGCAAGAACAGCTATACAGATGGTTTCTTTACATATAAACATTTGAAATTGCCAGACACATCTGCATCACGGTATAATAAAACCATGAACCTTGATGAATGTCAGAGGTCATGTCTTACAACCTGTTCCTGTACAGCATATACAAATTTGGATATCCGTGATGGAGGGAGTGGCTGTCTACTTTGGTCTAATGATCTGGTTGACATGAGGAAATTCTCTGATTGGGGACAAGACTTGTTTGTCAGAGTCCCAGCTTCAGAATTAGACCATGCTGGCCATGGAAATATCAAGAAGAAGATAGTAGAAATCATCGTTGGTGTAATCATTTTCGGATTTCTCATATGTGCATCCGTATTTATAATAAGAAATCCATGGACAGCAAGAAAACTTTACAACAAGCATTTCAAAAGTAAACCGAGAAAGGAAGATGGTGATTTGCCAACTTTCAATTTGTCAGTCTTAGCTAATGCTACCGAAAACTTTTCAACTAAAAATAAGCTTGGCGAAGGTGGCTTTGGACCAGTGTACAAGGGAAAGCTGATAGATGGACAAGTGTTAGCTGTGAAAAGGCTTTCAAAGGAATCTGGACAAGGGCTAGAAGAATTCAAAAATGAAGTAGCATTGATTGCGAAACTTCAGCACCGTAATCTTGTAAAACTTCTGGGTTGTTGTATCGAAGGAGAAGAAAAAATGTTAATTTACGAATACATGCCGAATCAAAGCTTGGACTACTTTATTTTTGATGAAACCAAAAGGAAATTGCTAGACTGGCATAAGCGTTTCAACATTATTAGTGGCATTGCTCGAGGACTTTTGTATCTTCATCAAGACTCTAGGCTGAGGATTATTCACAGAGACCTAAAAACTAGCAATATTTTACTAGATGCAAATTTTGATCCCAAAATATCAGACTTTGGCTTGGCTCGATCTTTTTTGGGAGATCAATTCGACGCAAAGACAAATAGAGTGGCTGGCACATATGGTTACATACCTCCTGAGTATGCTGCACGTGGGCATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTGATACTACTAGAGATTGTAAGTGGGAAGAAAAACAGAGAATTTTCAGACCCACAACACTACAATAATCTTCTCGGGCATGCATGGAGATTATGGACCGAAGGGAGGGCGCTGGAACTATTAGATGAAGTGTTAGGAGAACAATGCACACTCTCTGAAATCATACGATGCATACAAATAGGCCTACTATGTGTGCAACAAAGACCAGAAGATAGACCAGACATGTCATCCGTGGGTTTATTCTTGAATGGTGATAAATTATTGTCAAAGCCTAAGGTTCCGGGTTTTTACACCGAAAAGGATGTTACATCTGAAGCAAATTCTTCATCGGCAAATCACAAACTGTGCTCAGTTAATGAACTGTCCATCACAATATTAGATGCAAGATAG 2451 0.3925 MLLIWFLLISYTTTTSTSTLRSVNHLAVSQSIRDGETLVSAGGITELGFFSPGNSTRRYLAIWYTNVSPYTVVWVANRNTPLQNNSGVLKLNEKGILELLSPTNGTIWSSNISSKAVNNPVAYLLDSGNFVVKNGHETNENSFLWQSFDYPTDTLMSGMKLGWNIETGLERYLTSWKSVEDPAEGEYTSKIELTGYPQLVRFKGPDIRTRIGSWNGLYLVGYPGPIHETSQKFVINEKEVYYEYDVVARWAFSVYKLTPSGTGQSLYWSSERTTRKIASTGEEDQCENYTFCGANSICNFDGNRPTCECLRGYVPKSPDQWNMSVWSDGCVPRNKSNCKNSYTDGFFTYKHLKLPDTSASRYNKTMNLDECQRSCLTTCSCTAYTNLDIRDGGSGCLLWSNDLVDMRKFSDWGQDLFVRVPASELDHAGHGNIKKKIVEIIVGVIIFGFLICASVFIIRNPWTARKLYNKHFKSKPRKEDGDLPTFNLSVLANATENFSTKNKLGEGGFGPVYKGKLIDGQVLAVKRLSKESGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNQSLDYFIFDETKRKLLDWHKRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDANFDPKISDFGLARSFLGDQFDAKTNRVAGTYGYIPPEYAARGHFSVKSDVFSYGVILLEIVSGKKNREFSDPQHYNNLLGHAWRLWTEGRALELLDEVLGEQCTLSEIIRCIQIGLLCVQQRPEDRPDMSSVGLFLNGDKLLSKPKVPGFYTEKDVTSEANSSSANHKLCSVNELSITILDAR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2142 816 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 18 813 - -
Gso6g2142 816 SMART blect_4 29 151 IPR001480 -
Gso6g2142 816 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 813 - -
Gso6g2142 816 Gene3D Hepatocyte Growth Factor 337 417 - -
Gso6g2142 816 Coils Coil 805 816 - -
Gso6g2142 816 Pfam D-mannose binding lectin 71 177 IPR001480 -
Gso6g2142 816 Gene3D - 20 148 IPR036426 -
Gso6g2142 816 Gene3D Phosphorylase Kinase; domain 1 471 573 - -
Gso6g2142 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Gso6g2142 816 SUPERFAMILY Protein kinase-like (PK-like) 482 776 IPR011009 -
Gso6g2142 816 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Gso6g2142 816 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Gso6g2142 816 CDD STKc_IRAK 504 765 - -
Gso6g2142 816 Pfam PAN-like domain 338 406 IPR003609 -
Gso6g2142 816 SMART ntp_6 341 420 IPR003609 -
Gso6g2142 816 Gene3D Transferase(Phosphotransferase) domain 1 574 775 - -
Gso6g2142 816 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Gso6g2142 816 Pfam Domain of unknown function (DUF3403) 775 816 IPR021820 GO:0004674
Gso6g2142 816 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Gso6g2142 816 ProSiteProfiles Protein kinase domain profile. 498 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2142 816 Pfam Protein tyrosine and serine/threonine kinase 500 765 IPR001245 GO:0004672|GO:0006468
Gso6g2142 816 SMART serkin_6 498 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2142 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 182 IPR036426 -
Gso6g2142 816 CDD PAN_AP_plant 335 421 - -
Gso6g2142 816 CDD B_lectin 29 151 IPR001480 -
Gso6g2142 816 PIRSF SRK 1 816 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2142 Gso-Chr6 40860286 40864027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2142 486 811 Receptor kinase-like Gene Family AT4G11530 56.325 2.10e-121 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2142 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2142 - - gmx:100776576 1649.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2142 6 40860286 40864027 Gso6g2142 6 40860286 40864027 ECH