Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2141 ATGTTATTTATTTGGTTCTTTATATTCTTCTACATGACTACAACTTCCACTTCAGTAGACCGTTTAGCGGTGACTCAATCCATCCGAGATGGTGAGACTTTGGCTTCTGCGGGTGGAATTATAGAAGCGGGTTTCTTCAGTCCCGGAAATTCCATAAGACGATATTTGGGTATATGGTACAGAAATGTATCTCCTTTCATAGTGGTGTGGGTGGCTAACAGAAATACACCTCTTGAGAATAAATCAGGAGTCCTTAAACTCAATGAAAAAGGGGTTCTTGAGCTTCTCAACGCTACAAACAACACTATTTGGTCATCCAATATTGTATCAAGCAATGCAGTGAATAACCCAATTGCTTGCCTTTTTGATTCGGGAAATTTTGTGGTGAAAAATAGCGAGGACGGCGTCTTGTGGCAGAGTTTTGATTATCCGGGTGATACCTTGATGCCAGGAATAAAACTTGGATGGAACTTAGAGACTGGACTAGAAAGATCTATTTCTTCTTGGAAAAGTGATGATGATCCTGCTGAGGGAGAATATGCTATAAAAATTGATCTTCGAGGGTTACCTCAAATGATTGAATTCAAGGGATCTGATATAAGAATGAGAACAGGGTCGTGGAATGGCTTGACAACAGTTGGATATCCATCTCCAACTCCTCTATTGATACGCAAATTTGTGGTCAATGAAAAAGAGGTGTATTATGAGTACGAGATTATTAAAAGATCGATGTTCATTGTATCCAAGCTTACCCCATCAGGCATAACGCAGAGTTTCTCTTGGACAAACCAAACAAGCACACCGCAAGTTGTCCAAAATGGGGAGAAAGATCAATGCGAGAACTATGCCTTTTGTGGTGCAAATTCTATATGCATTTATGATGATAACTATCTAACTTGTGAATGTCTGAGAGGTTATGTTCCCAAGTCTCCTGATGAATGGAATATACGAATTTGGTTTGATGGTTGTATTCGGAGGAACAAATCTGATTGCAAAATCAGTTATACAGATGGCTTCTTGAAGTACTCACACTTGAAATTGCCCGACACGTCTTCGTCATGGTTTAGTAACACTATGAACCTTGATGAATGTCAAAAGTCATGTCTTGAAAACTGTTCTTGTAAAGCATATGCGAATTTAGATATCCGCAATGGAGGAAGTGGCTGTCTACTTTGGTTTAACACTCTACTTGACTTGAGGAAATTCTCTGAATGGGGACAAGATTTATATGTCAGGGTCCCTGTTTCAGAATTAGATCATGCTGCAGGCCATGGAAACATCAAGAAAAAGACAGTAGAAATCACACTTGGTGTGATTACTTTTGGATTAGTCACATGTGCATGCATATTTATAAAAAAATATCCAGGAACAGCAAGAAAACTTTGCTGCCAGCATTGCAAAATTAAACAGAAAAAGGGAGATGCGGATTTGCCAACTTTTGATTTGTCAGTCTTAGCTAATGCTACCCAAAACTTTTCAACTAAAAACAAGCTCGGAGAAGGTGGCTTTGGACAAGTATACAAGGGCACGTTGATAGATGGACAAGAGTTAGCTGTGAAAAGGCTTTCAAAGAAATCTGGACAAGGGGTAGAAGAGTTCAAAAATGAAGTAGCATTGATTGCAAAACTTCAGCATCGTAATCTTGTTAAGCTTCTGGGTTGTTGCATCGAAGGAGAAGAAAAAATGTTAATTTATGAATACATGCCCAACCAAAGCTTGGACTACTTTGTTTTTGATGAAACCAAAAGAAAGATGCTTGATTGGCATAAGCGTTTCAACATTATTAGTGGCATAGCTCGAGGACTTCTGTATCTTCATCAAGACTCTAGGCTGAGGATTATTCACAGAGATCTCAAACCTAGCAATATTTTACTGGACGCAAATTTGGATCCCAAAATATCAGACTTTGGCTTGGCAAGATTATTTTTGGGAGATCAAGTTGAGGCAAACACAAATAGGGTGGCTGGCACATATGGTTACATTCCTCCTGAGTATGCTGCACGTGGGCATTTCTCAGTTAAGTCAGATGTCTATAGTTATGGTGTGATAATACTAGAGATTGTAAGTGGGAAGAAAAACAGAGAATTTTCTGACCCAGAACACTACAATAATCTTCTTGGGCATGCATGGAGATTATGGAGTGAAGAGAGGGCGTTGGAACTATTGGATGAAGTGTTAGGAGAACAATGCGAGCCCGCTGAAGTCATACGATGCATACAGGTAGGCCTACTGTGTGTGCAACAAAGACCAGAGGATAGACCAGACATGTCATCCGTGGTTTTATTGTTGAATGGTGATAAATTATTGTCAAAGCCAAAGGTTCCTGGTTTTTACACTGAAAGGGATGTTTCATCTGAAGCCAGTTCTTCATCGGCAAATCACAAACTTTGCTCAGTTAATGAACTTTCCATCACAGTGTTAAATGCAAGATAA 2433 0.3938 MLFIWFFIFFYMTTTSTSVDRLAVTQSIRDGETLASAGGIIEAGFFSPGNSIRRYLGIWYRNVSPFIVVWVANRNTPLENKSGVLKLNEKGVLELLNATNNTIWSSNIVSSNAVNNPIACLFDSGNFVVKNSEDGVLWQSFDYPGDTLMPGIKLGWNLETGLERSISSWKSDDDPAEGEYAIKIDLRGLPQMIEFKGSDIRMRTGSWNGLTTVGYPSPTPLLIRKFVVNEKEVYYEYEIIKRSMFIVSKLTPSGITQSFSWTNQTSTPQVVQNGEKDQCENYAFCGANSICIYDDNYLTCECLRGYVPKSPDEWNIRIWFDGCIRRNKSDCKISYTDGFLKYSHLKLPDTSSSWFSNTMNLDECQKSCLENCSCKAYANLDIRNGGSGCLLWFNTLLDLRKFSEWGQDLYVRVPVSELDHAAGHGNIKKKTVEITLGVITFGLVTCACIFIKKYPGTARKLCCQHCKIKQKKGDADLPTFDLSVLANATQNFSTKNKLGEGGFGQVYKGTLIDGQELAVKRLSKKSGQGVEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNQSLDYFVFDETKRKMLDWHKRFNIISGIARGLLYLHQDSRLRIIHRDLKPSNILLDANLDPKISDFGLARLFLGDQVEANTNRVAGTYGYIPPEYAARGHFSVKSDVYSYGVIILEIVSGKKNREFSDPEHYNNLLGHAWRLWSEERALELLDEVLGEQCEPAEVIRCIQVGLLCVQQRPEDRPDMSSVVLLLNGDKLLSKPKVPGFYTERDVSSEASSSSANHKLCSVNELSITVLNAR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2141 810 Pfam PAN-like domain 334 399 IPR003609 -
Gso6g2141 810 Gene3D Phosphorylase Kinase; domain 1 465 567 - -
Gso6g2141 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 808 - -
Gso6g2141 810 PIRSF SRK 1 810 IPR024171 GO:0004674
Gso6g2141 810 ProSiteProfiles EGF-like domain profile. 275 312 IPR000742 -
Gso6g2141 810 CDD STKc_IRAK 498 765 - -
Gso6g2141 810 SMART blect_4 25 144 IPR001480 -
Gso6g2141 810 Gene3D Transferase(Phosphotransferase) domain 1 568 771 - -
Gso6g2141 810 Gene3D Hepatocyte Growth Factor 330 409 - -
Gso6g2141 810 Pfam D-mannose binding lectin 68 170 IPR001480 -
Gso6g2141 810 SMART ntp_6 334 413 IPR003609 -
Gso6g2141 810 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Gso6g2141 810 Gene3D - 13 141 IPR036426 -
Gso6g2141 810 ProSiteProfiles PAN/Apple domain profile. 331 414 IPR003609 -
Gso6g2141 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Gso6g2141 810 SMART serkin_6 492 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2141 810 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 175 IPR036426 -
Gso6g2141 810 CDD B_lectin 25 144 IPR001480 -
Gso6g2141 810 Pfam Domain of unknown function (DUF3403) 769 810 IPR021820 GO:0004674
Gso6g2141 810 SUPERFAMILY Protein kinase-like (PK-like) 477 771 IPR011009 -
Gso6g2141 810 Pfam S-locus glycoprotein domain 203 310 IPR000858 GO:0048544
Gso6g2141 810 ProSiteProfiles Bulb-type lectin domain profile. 19 142 IPR001480 -
Gso6g2141 810 ProSiteProfiles Protein kinase domain profile. 492 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2141 810 Pfam Protein tyrosine and serine/threonine kinase 494 760 IPR001245 GO:0004672|GO:0006468
Gso6g2141 810 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 14 808 - -
Gso6g2141 810 CDD PAN_AP_plant 328 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2141 Gso-Chr6 40853574 40857607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2141 480 810 Receptor kinase-like Gene Family AT4G11530 55.786 4.81e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2141 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2141 - - gmx:100776576 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2141 6 40853574 40857607 Gso6g2141 6 40853574 40857607 ECH