Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2140 ATGATTAAAAAACCAGGGACAGCAACAAAATTGAACAAGAAGCGTTACAAAAATAAACACCGAACAGAAGACATTGACTTGCCAACAGTCTTAGCTAATGTGACTAAAAACTTCTCAACAAAAAATAAGCTCGGAGAAGGTGGATTTGGGCCGGTATACAAGGGCACACTTATAGATGGGAAAGCGTTAGCTGTGAAAAGGCTTTCAAAGAAGTCTGGACAAGGTTTAGATGAGTTCAAAAATGAAGTGGCACTAATTGCCAAACTTCAGCACTGTAATCTTGTAAAGCTTCTTGGTTTCTCCGTAGAAGGAGAAGAAAAAATGTTGATTTATGAGTACATGCCCAACCAAAGCTTGAACTACTTTGTTTTTGGTTGGACCCCTTACACAAAAGGAAGTTGCATTGCGAGGGGACTTCTTTATCTTCACCAAGACTTCAGGCTGAGGATTATTCACAGGGATCTAAAAACTAGCAATATTTTGCTGGATGCAAATTTGGATCCAAAAATATCAGACTTTCGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGAAAACACAAATAGGGTGACAGGAACATATGGTTACATGCCTCCTGAGTATGCTGTGCGTGGCAATTTCCCAGTAAAATCGGATGTCTTTAGTTACGGAGTAATTGTACTAGAGATTGTAAGTGATAAGAGAAACAGAGAATTTGCAGACCCCGAAAACTACAATAATCTTCTTGGACATGTAAGGCAACAGGTCTGA 753 0.3944 MIKKPGTATKLNKKRYKNKHRTEDIDLPTVLANVTKNFSTKNKLGEGGFGPVYKGTLIDGKALAVKRLSKKSGQGLDEFKNEVALIAKLQHCNLVKLLGFSVEGEEKMLIYEYMPNQSLNYFVFGWTPYTKGSCIARGLLYLHQDFRLRIIHRDLKTSNILLDANLDPKISDFRLARSFLGDQVEENTNRVTGTYGYMPPEYAVRGNFPVKSDVFSYGVIVLEIVSDKRNREFADPENYNNLLGHVRQQV* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2140 250 SUPERFAMILY Protein kinase-like (PK-like) 30 230 IPR011009 -
Gso6g2140 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Gso6g2140 250 ProSiteProfiles Protein kinase domain profile. 38 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2140 250 Gene3D Transferase(Phosphotransferase) domain 1 130 250 - -
Gso6g2140 250 Gene3D Phosphorylase Kinase; domain 1 4 113 - -
Gso6g2140 250 PIRSF ILK 1 244 - -
Gso6g2140 250 SMART serkin_6 38 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2140 250 Pfam Protein kinase domain 39 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2140 250 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 246 - -
Gso6g2140 250 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2140 Gso-Chr6 40835654 40836761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2140 34 246 Receptor kinase-like Gene Family AT4G23230 59.459 4.60e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2140 Pkinase 6.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2140 - - gsj:114416260 507.294