Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2136 ATGGCGGACAACTTCAGAATGTTATTTATTTGGTTGTTCTTACTATTATCCTACTTGAGAAACTCAACTTCATTGGACAGTTTATTACCCGGTCAGTCTATCCGAGATGGGGAGACATTAGTTTCAGAAGAAGAAACATTTGAAGTTGGTTTCTTTAGCCCTGGAACTTCAACAGGACGATACTTGGGTATATGGTACAGGAATGTATCTCCTTTAATAGTGGTATGGGTGGCTAACAGAGAAACACCACTTCAAAATAAGTCAGGAGTTTTAAAACTGGATGAAAGAGGAGTTCTTGTAATTCTAAATGGCACCAACAGCACAATTTGGTGGTCCTACAACACATCAAGCAAAGTAATAAAGAATCCAATTGCACAGCTCTTGGACTCTGGAAATATTGTGGTTAGAAATGAACACGATATAAACGAGGACAACTTTTTGTGGCAGAGTTTCGATTATCCGTGTGATAAATTATTGCCAGGAATGAAAATTGGATGGAACTTAGTAACTGGTCTAGATAGAACTATATCGTCTTGGAAAAAGGAAGATGATCCTGCTAAGGGAGAGTATTCTTTAAAACTTGATCTTAAAGGATTTCCACAACTTTTTGGATACAAGGGGAATGCAATAAGATTTAGAGTAGGCTCATGGAATGGACAGGCTTTGGTTGGTTATCCAATTCGTCCACTCACAGAATATGTACATGAATTAGTTTTTAATGAAAAGGAAGTGTATTATGAATATAAAACCCTTGATAGATCGATTTTCTTCATAGTTACATTGAACTCTTCAGGGATTGGGAATGTTCTTCTATGGACTAATCAAACAAGAGGGATACAAGTTTTTTCACTTTGGTCAGATCTGTGTGAAAACTATGCTATGTGTGGTGCAAATTCTATATGCAGTATGGATGGTAACTCTCAGACATGTGATTGCATCAAGGGGTATGTTCCAAAGTTCCCTGAACAATGGAATGTATCAAAATGGTACAATGGCTGTGTTCCAAGGACTACACCTGATTGTAGAAACAGCAACACAGATGGCTTCTTGAGGTACACAGACTTGAAATTGCCAGACACATCTTCATCATGGTTCAATACGACCATAAACCTTGAGGAATGTAAGAAGTATTGTCTGAAAAACTGTTCTTGTAAAGCATATGCAAATTTGGATATTCGAAATGGAGGAAGCGGCTGTTTACTCTGGTTTGATGACCTGATTGATATGAGAAAATTCTCTATAGGGGGACAAGACATTTATTTCAGAATCCAGGCATCATCAGTGCTAGATCACGTTCCCGTCAATGGCCATGGGAAAAACAAAAGGATGATAGGAATCACAGTTGGTGCAAATATACTTGGATTAACTGCATGCGTTTGCATAATAATGATACTCAAAAAGCTAGGGGTAGCAAGAATAATTTATAGGAACCATTTCAAACGAAAATTGAGAAAAGAAGGCATTGATTTGTCAACATTTGATTTCCCAATCATAGCAAGAGCCACTGAAAACTTTGCCACGAGTAACAAATTGGGAGAAGGTGGATTTGGACCTGTGTACAAGGGAAGACTGAAGGATGGGCAAGAGTTTGCTGTGAAAAGGCTTTCAAAGAAGTCAGGACAAGGGCTGGAGGAGTTCGAAAATGAAGTTGTGTTGATTGCAAAACTTCAACATCGTAATCTTGTCAAGCTCATAGGTTGCTGCATTGAAGGCAATGAAAGAATGTTGATTTATGAATATATGCCAAACAAAAGTTTGGACTGCTTTATTTTTGATGAAACCAGAAGACATTTGGTGGATTGGCCTATACGATTCAACATTATCTGTGGCATTGCTCGAGGAGTTCTTTATCTTCATCAAGACTCTAGACTGAGGATTATACATAGAGATTTGAAAACCAGCAATATTTTACTAGATGCAAATATGGATCCTAAAATATCAGACTTCGGCTTAGCACGAACATTCTGCGGAGATCAAGTTGGGGCAAACACAAATAAGGTGGCTGGAACTTATGGTTACATGCCTCCTGAGTATGCTACTCGTGGGCATTTCTCAATGAAATCAGATGTTTTTAGTTATGGTGTGATAGTGCTAGAGATTGTAAGTGGCAAGAGGAATAGAGAATTTTCAGACCCAACACACTCCCTTAATCTTCTTGGACATGCATGGAGATTGTGGACTGAAGAGAGGGCACTGGAACTACTGGATGGAGTGTTAAGGGAAAGATTCATAGCTTCTGAAGTCATACGATGCATACAGGTGGGCCTGTTATGCGTGCAACAAACACCAGAAGATAGGCCAGACATGTCACCAGTGGTTCTAATGTTGAATGGTGAGAAATTATTGCCCAACCCAAAGGTTCCTGGGTTTTACACAGAAGGAGATGTTCACCTGAATCAGTCTAAACTTAAGAACCCCTTCTCAAGTAATCAAATTTCAATCACGATGTTAGAAGCTAGATAG 2463 0.3881 MADNFRMLFIWLFLLLSYLRNSTSLDSLLPGQSIRDGETLVSEEETFEVGFFSPGTSTGRYLGIWYRNVSPLIVVWVANRETPLQNKSGVLKLDERGVLVILNGTNSTIWWSYNTSSKVIKNPIAQLLDSGNIVVRNEHDINEDNFLWQSFDYPCDKLLPGMKIGWNLVTGLDRTISSWKKEDDPAKGEYSLKLDLKGFPQLFGYKGNAIRFRVGSWNGQALVGYPIRPLTEYVHELVFNEKEVYYEYKTLDRSIFFIVTLNSSGIGNVLLWTNQTRGIQVFSLWSDLCENYAMCGANSICSMDGNSQTCDCIKGYVPKFPEQWNVSKWYNGCVPRTTPDCRNSNTDGFLRYTDLKLPDTSSSWFNTTINLEECKKYCLKNCSCKAYANLDIRNGGSGCLLWFDDLIDMRKFSIGGQDIYFRIQASSVLDHVPVNGHGKNKRMIGITVGANILGLTACVCIIMILKKLGVARIIYRNHFKRKLRKEGIDLSTFDFPIIARATENFATSNKLGEGGFGPVYKGRLKDGQEFAVKRLSKKSGQGLEEFENEVVLIAKLQHRNLVKLIGCCIEGNERMLIYEYMPNKSLDCFIFDETRRHLVDWPIRFNIICGIARGVLYLHQDSRLRIIHRDLKTSNILLDANMDPKISDFGLARTFCGDQVGANTNKVAGTYGYMPPEYATRGHFSMKSDVFSYGVIVLEIVSGKRNREFSDPTHSLNLLGHAWRLWTEERALELLDGVLRERFIASEVIRCIQVGLLCVQQTPEDRPDMSPVVLMLNGEKLLPNPKVPGFYTEGDVHLNQSKLKNPFSSNQISITMLEAR* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2136 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Gso6g2136 820 CDD PAN_AP_plant 337 423 - -
Gso6g2136 820 Pfam D-mannose binding lectin 74 180 IPR001480 -
Gso6g2136 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Gso6g2136 820 ProSiteProfiles EGF-like domain profile. 285 322 IPR000742 -
Gso6g2136 820 Gene3D - 21 151 IPR036426 -
Gso6g2136 820 SMART blect_4 31 154 IPR001480 -
Gso6g2136 820 CDD STKc_IRAK 511 778 - -
Gso6g2136 820 ProSiteProfiles Protein kinase domain profile. 505 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2136 820 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Gso6g2136 820 Gene3D Phosphorylase Kinase; domain 1 478 580 - -
Gso6g2136 820 Gene3D Transferase(Phosphotransferase) domain 1 581 782 - -
Gso6g2136 820 SMART ntp_6 344 423 IPR003609 -
Gso6g2136 820 SUPERFAMILY Protein kinase-like (PK-like) 491 786 IPR011009 -
Gso6g2136 820 SMART serkin_6 505 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2136 820 Pfam Protein tyrosine and serine/threonine kinase 507 773 IPR001245 GO:0004672|GO:0006468
Gso6g2136 820 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 818 - -
Gso6g2136 820 CDD B_lectin 32 154 IPR001480 -
Gso6g2136 820 Gene3D Hepatocyte Growth Factor 341 425 - -
Gso6g2136 820 Pfam PAN-like domain 341 409 IPR003609 -
Gso6g2136 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Gso6g2136 820 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Gso6g2136 820 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 818 - -
Gso6g2136 820 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2136 Gso-Chr6 40712917 40721200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2136 433 791 Receptor kinase-like Gene Family AT4G23190 52.174 9.70e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2136 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2136 - - gmx:100817558 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2136 6 40712917 40721200 Gso6g2136 6 40712917 40721200 ECH