Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2134 ATGGTGCAAAACTTCAGAATGTTATTTATTTGGTTCTTACTCTTATGGTACTTGAGAAACTCCACTTCATTGGACAGTTTAGCAGTGAGTCAATCTATCCATGATGGGGAGACATTAGTTTCAGAAGAAGGAACATTTGAAGTTGGTTTCTTTAGCCCTGGAACTTCAACAAGACGATACGTAGGTATATGGTATAGGAATCTATCTCCTTTAACAGTGGTCTGGGTTGCTAACAGAGAAAATGCACTTCAGAATAACGCAGGAGTTTTGAAACTTGATGAAAGAGGGCTTCTTGTGATTCTCAATGGCACCAATAGCACAATTTGGTGGTCCAACAACACATCAAGCAAAGTAGTAAAGAATCCAATTGCACAGCTTTTGGACTCTGGAAATCTTGTTGTTAGAAATGAAAGGGATATAAATGAGGACAACTTTTTGTGGCAGAGTTTTGATTATCCTTGTGATAAATTTTTGCCAGGAATGAAGCTTGGATGGAACTTAGTAACTGGTCTAGATAGAACAATAACATCTTGGAAAAATGAAGATGATCCTTCTAAGGGAGAATATTCTATGAAACTTGATCTTAGAGGATATCCACAAGTTATTGGATACAAGGGGGATGTAGTAAGATTTAGATCAGGCTCATGGAATGGACAGGCTTTGGTGGGTTATCCAATTCGTCCATTCACACAATATGTACATGAATTAGTGTTTAATGAAAAGGAAGTGTATTATGAGTATAAGACCCTTGATAGATCGACTTTCTTCATAGTTGCATTGACCCCTTCAGGGATTGGGAACTATCTCCTTTGGACAAATCAAACAAGGAGGATAAAAGTTCTCTTATTTGGTGAGTCAGAACCGTGTGAAAAATATGCTATGTGTGGTGCAAATTCTATATGCAACATGGATAATAGCTCTCGGACATGTGATTGCATCAAAGGGCATGTTCCAAAGTTCCCTGAACAATGGAATGTATCACATTGGTATAATGGCTGTGTTCCAAGGAATAAATCTGATTGTAAAACCAACAACACAGATGGCTTCTTGAGGTATACAGACATGAAAATTCCAGATACATCTTCATCATGGTTCGATAAGACCATGAACCTTGACGAATGTCAGAAGTATTGCCTGAAAAACTGCTCTTGTAAAGCATATGCAAATTTGGATATCCGTGATGGAGGAAGTGGGTGTTTACTTTGGTTTGATGATCTGATTGATATGAGACACTTCTCTAATGGAGGACAAGACCTTTATTTGAGAGTCGTTTCTTTAGAGATAGGTACTCAATTTTTTTGGTTACTTCACTTCCCTTTCCTTTTCATTGTCTGGTTAATCATATATTCCTTTTTTCTATATACATCATCCAAGCTAGATTTTACTGCAGTCAATGACAAAGGAAAAAACATGAAAAAGATGTTCGGAATCACAATTGGTACAATTATTCTTGGATTGACTGCAAGTGTTTGCACAATAATGATACTCAGAAAGCAAGGGGTAGCAAGAATAATTTATAGGAACCATTTCAAACGAAAACTGAGAAAAGAAGGCATTGATTTGTCCACATTTGATTTCCCCATCATAGAAAGAGCCACTGAAAACTTCACTGAGAGTAACAAATTGGGAGAAGGTGGCTTTGGACCTGTGTACAAGGGAAGACTGAAGGATGGCCAAGAGTTTGCTGTGAAAAGGCTTTCCAAGAAGTCAGGTCAAGGGTTGGAGGAGTTCAAAAATGAAGTTGTATTGATTGCGAAACTTCAACACCGTAATCTTGTGAAGCTTATAGGTTGCTGCACTGAAGGAAAAGAAAGAATGTTGATCTATGAATACATGCAAAACAAAAGCTTGGACTACTTTATTTTTGATGAAACTAGAAGGAATTTGGTAGATTGGCCTAAACGATTTAACATTATTTGTGGCATTGCTCGAGGACTTCTTTATCTCCATGAAGATTCTAGATTGAGGATTGTACATAGAGATCTGAAAACTAGCAACATTTTACTAGATGAAAATTTCAATCCAAAAATATCAGACTTTGGCTTAGCACGAGCATTCTTGGGAGATCAAGTTGAGGCCAACACAAATAGGGTGGCTGGAACATATGGGTACATGCCTCCCGAGTATGCTGCCTGCGGACATTTTTCAATGAAATCAGATGTCTTTAGTTATGGTGTGATAGTGTTAGAGATTGTATGTGGCCAAAGGAACAGAGAGTTTTCAGACCCAAAACACTACCTTAATCTTCTTGGACATGCATGGAGATTGTGGACTAAAGAGAGTGCATTAGAACTAATGGATGGAGTGTTAAAGGAAAGATTCACACCTTCTGAAGTCATACGTTGCATTCAAGTGGGCCTGTTATGCGTACAACAAAGACCAGAAGATAGGCCAAACATGTCATCAGTGGTTCTAATGCTGAATGGTGAGAAATTAATATTGCCCAACCCGAAGGTTCCGGGTTTCTACACAAAAGGAGATGTTACCCCTGAATCAGATATTAAACCTGCAAATCGCTTCTCAAGTAATCAAATTTCAATCACCTTGTTAGAAGCAAGATAG 2562 0.3802 MVQNFRMLFIWFLLLWYLRNSTSLDSLAVSQSIHDGETLVSEEGTFEVGFFSPGTSTRRYVGIWYRNLSPLTVVWVANRENALQNNAGVLKLDERGLLVILNGTNSTIWWSNNTSSKVVKNPIAQLLDSGNLVVRNERDINEDNFLWQSFDYPCDKFLPGMKLGWNLVTGLDRTITSWKNEDDPSKGEYSMKLDLRGYPQVIGYKGDVVRFRSGSWNGQALVGYPIRPFTQYVHELVFNEKEVYYEYKTLDRSTFFIVALTPSGIGNYLLWTNQTRRIKVLLFGESEPCEKYAMCGANSICNMDNSSRTCDCIKGHVPKFPEQWNVSHWYNGCVPRNKSDCKTNNTDGFLRYTDMKIPDTSSSWFDKTMNLDECQKYCLKNCSCKAYANLDIRDGGSGCLLWFDDLIDMRHFSNGGQDLYLRVVSLEIGTQFFWLLHFPFLFIVWLIIYSFFLYTSSKLDFTAVNDKGKNMKKMFGITIGTIILGLTASVCTIMILRKQGVARIIYRNHFKRKLRKEGIDLSTFDFPIIERATENFTESNKLGEGGFGPVYKGRLKDGQEFAVKRLSKKSGQGLEEFKNEVVLIAKLQHRNLVKLIGCCTEGKERMLIYEYMQNKSLDYFIFDETRRNLVDWPKRFNIICGIARGLLYLHEDSRLRIVHRDLKTSNILLDENFNPKISDFGLARAFLGDQVEANTNRVAGTYGYMPPEYAACGHFSMKSDVFSYGVIVLEIVCGQRNREFSDPKHYLNLLGHAWRLWTKESALELMDGVLKERFTPSEVIRCIQVGLLCVQQRPEDRPNMSSVVLMLNGEKLILPNPKVPGFYTKGDVTPESDIKPANRFSSNQISITLLEAR* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2134 853 Gene3D - 20 150 IPR036426 -
Gso6g2134 853 Gene3D Transferase(Phosphotransferase) domain 1 612 813 - -
Gso6g2134 853 ProSiteProfiles PAN/Apple domain profile. 341 424 IPR003609 -
Gso6g2134 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Gso6g2134 853 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 19 426 - -
Gso6g2134 853 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 454 850 - -
Gso6g2134 853 CDD PAN_AP_plant 338 423 - -
Gso6g2134 853 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Gso6g2134 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Gso6g2134 853 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Gso6g2134 853 Pfam Protein tyrosine and serine/threonine kinase 539 805 IPR001245 GO:0004672|GO:0006468
Gso6g2134 853 PIRSF SRK 1 853 IPR024171 GO:0004674
Gso6g2134 853 Pfam PAN-like domain 341 409 IPR003609 -
Gso6g2134 853 SMART serkin_6 536 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2134 853 CDD B_lectin 30 153 IPR001480 -
Gso6g2134 853 SMART ntp_6 344 423 IPR003609 -
Gso6g2134 853 CDD STKc_IRAK 542 809 - -
Gso6g2134 853 SUPERFAMILY Protein kinase-like (PK-like) 521 807 IPR011009 -
Gso6g2134 853 Pfam D-mannose binding lectin 72 179 IPR001480 -
Gso6g2134 853 SMART blect_4 30 153 IPR001480 -
Gso6g2134 853 Gene3D Hepatocyte Growth Factor 340 421 - -
Gso6g2134 853 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 454 850 - -
Gso6g2134 853 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 426 - -
Gso6g2134 853 Gene3D Phosphorylase Kinase; domain 1 509 611 - -
Gso6g2134 853 ProSiteProfiles Protein kinase domain profile. 536 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2134 Gso-Chr6 40687637 40691631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2134 476 825 Receptor kinase-like Gene Family AT4G23190 51.955 6.65e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2134 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2134 - - gsj:114416252 1742.24