Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2130 ATGGCTTTTACTTCTAATGACGTCATCCAATGCACCTCTTCTTCTTCGTTTGAGTATGACGTGTTTGTGAGCTTCCGCGGTGAAGACACACGCAACAGCTTCACCGGTTTTCTTCTTCAAGCTCTGAAAAAAGAAGGCATCGAGGCCTTCAAAGATGATAAAGATATCAGGAAAGGCGAATCCATAGCACCAGAGCTAATACGAGCCATTGAAGGGTCTCATGTTTTCCTTGTTGTCTTTTCCAAGGGCTATGCTTCCTCAACTTGGTGCCTGCGTGAACTAGCACATATCTGGAATTGCATTCAAACATCACCCAGACATCTTCTGCCTATTTTTTATGATGTTGATCCATCACAAGTGCGAAAACAGAGTGGAGACTATCAGAAAGCCTTTGCCCAACACCAACAAAGTTTCAGGTTCCAAGAGAAGGAAATTAACACATGGAGAGAAGTTCTGGAACGAGTAGCCAATCTCTCTGGTTGGGATATCAGATATAAGCAACAACATGCAGTGATTGAAGAAATTGTCCAGCAGATAAAAAATATCTTGGGTTCCAAATTTTCAACTCTTCCATATGATAATCTAGTTGGGATGGAATCTCATTTTGCTAAATTATCAAAGCTAATATGTCTGGGACCAGCTAATGATGTTCGAGTTGTTGGAATTACTGGGATGGGTGGAATAGGAAAGTCAACTCTTGGTCGAGCTTTATATGAAAGAATCTCTCATCAATTTAATTCTCTTTGTTATATTGATGATGTAAGTAAACTTTATCAAGGTTATGGTACATTAGGTGTACAAAAACAGTTACTTTCACAATCTCTAAACGAAAGAAATCTAGAGATTTGCAATGTATCTGATGGAACACTTCTGGCATGGAAGAGGCTATCCAATGCAAAGGCACTTATAGTTCTTGACAATGTAGATCAAGATAAACAACTTGATATGTTTACAGGAGGTAGAGTTGACCTGTTACGTAAATGTCTAGGTAGAGGAAGCATAGTCATTATAATTTCTAGAGATAAACAAATATTGAAAGCACATGGAGTAGATGTTATTTACCAAGTGAAGCCATTGAATGATGAAGATGCTGCTCGATTGTTTTGTAGAAAAGCATTCAAAAGTAATTATATTGTGAGTGATTTTGAAAAGATGACTGGTGATGCACTATTACATTGTCAAGGTCATCCCTTAGCAATTGAAGTATTGGGCTCATCTTTGTTTGATAAGGATGTTTCTCATTGGAGAAGTGCATTGGCTTCTCTAAGAGTAAATAAAAGTAAAAATATTATGAATGTGTTGCGAATAAGTTTTGATCAATTAGAGGATACACACAAGGAAATATTTCTTGATATTGCTTGTTTCTTCAATGGTAGATATGTGGAAGGTGTGAAAGAAGTTCTAGATTTTCGTGGATTTAATCCAGAATATGGCCTACAAGTTCTCATTGATAAATCATTTATAACCGCGACATTTAAAATTCACATGCATGACTTGTTATGCGATTTAGGCAAGTGTATTGTAAGAGAAAAATCACCTACGAAGCCAAGAAAGTGGAGTAGGTTGTGGGATTTTAAAGATTTCTACAAAGTTATGTCAGACAATATGCCAGCAGAAAATGTCGAGGCCATTGTAGTTCAAATGAATCACCATCATGGGACAACAATGGGGGTTGATGGTCTATCAACAATGAGTCACCTTAAGTTACTTCAACTTGAAAGTTCTATTCCTGATTCAAAAAGGAAATTTTCTGGAATGCTTGTTAATCTTTCCAATGAATTAGGGTATCTTAAATGGATTTTCTATCCTTTTAAGTGTTTGCCACCCAGTTTTGAGCCAGACAAACTTGTTGAGTTGATCTTGCGTCATAGCAACAGCAAAAAACTTTGGAAAGGCAGAAAGCCTCTACCCAATTTGAGGCATTTGGATCTCTCTCACTCCAAAAATCTAATTAAAATGCCATATATTGGAGATTCCCTATATCTTGAGACGCTTAATCTCCAAGGATGTATTCAACTCAAAGAGATTGGTCTGTCCATTGTTCTTTCACGAAGGCTTTCTTATCTGGATTTGAAAGATAGCAAATGTCTTATCAATTTGCCACGGTTTGGAGAGGACCTAATTCTTCAAATCCTAGTACTCGAAGGATGTCAAAAACTCAGACACATTGATTCATCCATCGGTCTTCTAAAAAAGCTCAGAAGATTGGATTTGAAAAACTGCAAAAATCTAGTAAGCTTACCCAATAGCATACTAGGCCTCAATTCTCTTGAATGTCTGAATCTCTCTGGCTGTTCAAAACTGTACAACATCCAGTTATTATATGAACTAAGGGATGCAGAGCATTTGAAGAAGATTGATATAGATGGAGCTCCTATTCATTTCCAATCAACATCTTCCTACTCCAGACAACATAAAAAATCAGTTGGGTGCTTAATGCCTTCCTCGCCAATTTTTCCATGTATGTGTGAACTTGATCTAAGTTTCTGTAATTTAGTTCAAATTCCTGATGCTATTGGAATTATATGTTGCTTAGAAAAGCTAGATTTAAGTGGTAACAATTTTGTTACACTGCCCAACCTCAAGAAGCTTTCCAAACTGTTCAGTTTAAAGTTACAACATTGCAAGAAGTTGAAATCTTTGCCTGAGCTCCCTTCACGGATTGACTTGCCAACTGATGCATTCGATTGTTTTAGGCTAATGATTCCATCTTATTTCAAGAATGAAAAAATAGGATTATACATTTTTAACTGCCCAGAATTAGTTGATAGGGATCGCTGCACTGACATGGCTCTTTCATGGATGATACTAATTTCTCAGGTGCAATTCAAACTTCCTTTTAACCGGAGGATTCAAAGTGTTACCACTGGAAGTGAAATACCAAGGTGGTTCAATAATCAGCATGAGGGAAATTGTGTAAGCTTAGACGCATCTCCTGTTATGCATGACGATAATTGGATTGGCGTTGCGTTTTGTTTAATGTTCGTGGTACCTCATGAAACACTCTCAGCGATGGGTTTTTCAGATTCAGATTGCCCACCATGGCATTCTTTTGGTGATATTCCAGTGGATTTTTATGGAGATCTAGATCTAGAACTTGTTTTAGACAAATCAGATCACATGTGGCTATTCTTTGTTAGTCGAACACAATTCAGTAGACAATTCTCTCTCAAGCTCAAATATCTTGGCAGGTTGGTTTTGAAATGTGATAAAGGGATGGGCTGGAGTGAGTCATATGCTGAGGTGAAGAAATACGGATATCGCTGGGTATATAAAGAGGATAAAGAAGAGCCATCAAATCCATTGGCTAGGAAGCGCAAATTTGAGGAAATTGAAGAAAATGAAGGAAAAAGAAAGAAAGGAATAATCTCAGCAGAAGGGAGAAAAGATGATGCAACCTCCTCCCAGGAAAAGACAATCAAGTTGTTGCAAAATGAATTTGAAAATCTTAGCCTGTAG 3459 0.3735 MAFTSNDVIQCTSSSSFEYDVFVSFRGEDTRNSFTGFLLQALKKEGIEAFKDDKDIRKGESIAPELIRAIEGSHVFLVVFSKGYASSTWCLRELAHIWNCIQTSPRHLLPIFYDVDPSQVRKQSGDYQKAFAQHQQSFRFQEKEINTWREVLERVANLSGWDIRYKQQHAVIEEIVQQIKNILGSKFSTLPYDNLVGMESHFAKLSKLICLGPANDVRVVGITGMGGIGKSTLGRALYERISHQFNSLCYIDDVSKLYQGYGTLGVQKQLLSQSLNERNLEICNVSDGTLLAWKRLSNAKALIVLDNVDQDKQLDMFTGGRVDLLRKCLGRGSIVIIISRDKQILKAHGVDVIYQVKPLNDEDAARLFCRKAFKSNYIVSDFEKMTGDALLHCQGHPLAIEVLGSSLFDKDVSHWRSALASLRVNKSKNIMNVLRISFDQLEDTHKEIFLDIACFFNGRYVEGVKEVLDFRGFNPEYGLQVLIDKSFITATFKIHMHDLLCDLGKCIVREKSPTKPRKWSRLWDFKDFYKVMSDNMPAENVEAIVVQMNHHHGTTMGVDGLSTMSHLKLLQLESSIPDSKRKFSGMLVNLSNELGYLKWIFYPFKCLPPSFEPDKLVELILRHSNSKKLWKGRKPLPNLRHLDLSHSKNLIKMPYIGDSLYLETLNLQGCIQLKEIGLSIVLSRRLSYLDLKDSKCLINLPRFGEDLILQILVLEGCQKLRHIDSSIGLLKKLRRLDLKNCKNLVSLPNSILGLNSLECLNLSGCSKLYNIQLLYELRDAEHLKKIDIDGAPIHFQSTSSYSRQHKKSVGCLMPSSPIFPCMCELDLSFCNLVQIPDAIGIICCLEKLDLSGNNFVTLPNLKKLSKLFSLKLQHCKKLKSLPELPSRIDLPTDAFDCFRLMIPSYFKNEKIGLYIFNCPELVDRDRCTDMALSWMILISQVQFKLPFNRRIQSVTTGSEIPRWFNNQHEGNCVSLDASPVMHDDNWIGVAFCLMFVVPHETLSAMGFSDSDCPPWHSFGDIPVDFYGDLDLELVLDKSDHMWLFFVSRTQFSRQFSLKLKYLGRLVLKCDKGMGWSESYAEVKKYGYRWVYKEDKEEPSNPLARKRKFEEIEENEGKRKKGIISAEGRKDDATSSQEKTIKLLQNEFENLSL* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2130 1152 SMART till_3 18 158 IPR000157 GO:0007165
Gso6g2130 1152 Pfam NB-ARC domain 215 436 IPR002182 GO:0043531
Gso6g2130 1152 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Gso6g2130 1152 Gene3D - 183 353 IPR027417 -
Gso6g2130 1152 Pfam Leucine Rich Repeat 615 632 IPR011713 -
Gso6g2130 1152 Gene3D - 358 442 IPR042197 -
Gso6g2130 1152 Gene3D - 11 182 IPR035897 -
Gso6g2130 1152 Pfam C-JID domain 956 1095 IPR045344 -
Gso6g2130 1152 Gene3D Ribonuclease Inhibitor 804 890 IPR032675 -
Gso6g2130 1152 ProSiteProfiles Leucine-rich repeat profile. 844 865 IPR001611 GO:0005515
Gso6g2130 1152 SUPERFAMILY L domain-like 497 888 - -
Gso6g2130 1152 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 29 697 - -
Gso6g2130 1152 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 697 1097 - -
Gso6g2130 1152 Gene3D Ribonuclease Inhibitor 548 708 IPR032675 -
Gso6g2130 1152 Gene3D Ribonuclease Inhibitor 709 792 IPR032675 -
Gso6g2130 1152 CDD ABC_ATPase 218 353 - -
Gso6g2130 1152 PRINTS Disease resistance protein signature 219 234 - -
Gso6g2130 1152 PRINTS Disease resistance protein signature 295 309 - -
Gso6g2130 1152 PRINTS Disease resistance protein signature 393 407 - -
Gso6g2130 1152 PRINTS Disease resistance protein signature 728 744 - -
Gso6g2130 1152 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 697 1097 IPR044974 GO:0006952
Gso6g2130 1152 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 697 IPR044974 GO:0006952
Gso6g2130 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 452 IPR027417 -
Gso6g2130 1152 Pfam TIR domain 19 189 IPR000157 GO:0007165
Gso6g2130 1152 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 161 IPR035897 -
Gso6g2130 1152 MobiDBLite consensus disorder prediction 1097 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2130 Gso-Chr6 40566185 40570687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2130 14 768 WRKY Transcription Factor Family AT4G12020 29.114 1.02e-76 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2130 - - gsj:114416945 2314.65