Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2129 ATGGCATTCACTTCTGCCCTCACATCCTTGACAACATTGGTTTGCCTCTGTATGTTTTGCGTTAATGCAACTACCCACAAAGAAATTCTGCAAACGGGACAATCATTGGGAACTTCAGATACCCTTCTTTCTTATGGTGGAAACTTCGAATTGGGTTTTTTCTCCAAAGATAACTCCACCAAGTACTACGTAGGCATATGGTATAAAAGGGTTCCAAACGACAAGATTGTGTGGGTTGCTAACAGAGACTCCCCAGTTCAAACATCCTCAGCAGTTCTGATTATTCAACCCGATGGGAACTTTATGATCATAGATGGACAAAAGACATACCGTGTGAACAAGGCATCAAACAATTTTAGCACCTATGCCACGCTTTTGGATTCTGGAAATTTGGTACTTCTGAACACCTCGAATCGAGCGATTTTGTGGCAGAGTTTTGATGATCCTACTGATACCCTAATACCTGGAATGAATCTAGGATATAATTCCGGTAACTTTCGGTCATTGAGATCATGGACAAGTGCTGATGACCCTGCCCCAGGCGAATTTTCTCTCAATTATGGTTCTGGCGCGGCCAGCCTAATCATCTACAATGGTACTGATGTGTTTTGGAGGGATGACAATTACAATGATACTTACAATGGTATGGAAGACTATTTCACTTGGTCAGTGGATAATGACTCTAGGCTGGTACTAGAAGTGTCTGGGGAGCTCATCAAGGAGAGTTGGTCGGAGGAAGCAAAGCGTTGGGTTTCTATTCGGTCATCAAAGTGTGGAACCGAAAATTCGTGTGGAGTTTTTTCCATTTGTAACCCTCAAGCACATGATCCTTGTGATTGTCTACATGGTTTCCAGCCATTGCATGCTGATTCTTGGAGGAATGGGAACACATCTGCTGGCTGTGTCCGGAAAATAGAATTGTCCTGCAGCAACAGAAGCAGTAATAATGTTAAATCCAATGATGGATTCTTCCAGTTCAATAAAGTTCAATTACCACAAACTTCTAATGGATACATCAAGCTAAAGATTGATAGAGCAAGAGAGTGTGAAAGTGCTTGCTCTAGAAATTGTTCGTGCGTTGCTTATGCTTATTATTTGAACAGTAGTATCTGCCAGTTGTGGCATGGTCAGGTATTGAGTCTAAAGAACATCTCAACATATTTGGACAATTCTGATAATACCAATCCAATTTTTTACCTCAGACTTGATGCGTCAGAATTGGTTACTGCTGATTCAAACCCAACAAATGCAACAGAACTAGCAACTGATTTTCGCAAGCATGAAAACTTGCTGAGGAATCTACTTCTGATTGTTATACTGATCTTACTTCTAGCATTTCTTATATTGGGCCTATTAGTTTATTGGACTAGAAGGCAAAGGAGAAAAGGGGAAGATTTGCTACGTTTTCATGTAAGCATGAGCATGAAAGTCGAAGATTCTGAGCTTACTGAAGCACATAGGGGTGCGAAAGTTAAGAAGAAGGAAGTCAAATTGCCATTATTCAGTTTTGTGAGTGTTGCAGCTGCTACAAATAATTTTTCAGATGCAAATAAACTTGGTGAGGGTGGCTTTGGACCTGTTTACAAGGGTATATTATTGAATGGGGATGAGGTTGCTGTAAAAAGGCTATCTCGAAGATCTGGTCAAGGATGGGAAGAGCTGAGAAATGAAGCCTTATTAATTGCAAAACTCCAGCACAATAATCTTGTTAGACTTCTAGGTTGCTGCATTGATCGAGATGAAAAGATGCTGATCTATGAATTGATGCCTAATAAAAGCCTGGATGTTTTCCTTTTTGATGCAACAAAAAGAAGGATGCTAGATTGGGGAACACGAGTTAGGATAATTGATGGGATTGCACAAGGAATCCTTTATCTTCACCAATATTCCAGGTTTCGGATCATTCATCGAGATTTAAAGGCTAGCAACATATTGTTGGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCGAGAATATTTGGTGATAATGAACTTCAAGCAAATACAAACCGTATAGTTGGAACATATGGATACATGTCCCCTGAATATGCTATGGAAGGCCTTTTCTCCATAAAATCAGACGTGTTTAGCTTTGGGGTCCTTCTGTTGGAGATTTTAAGTGGCAAGAAGAATACTGGCTTTTATCAAACAAATTCCTTCAATCTTCTTGGATACGCTTGGGATCTATGGACAAACAATTCGGGAATGGACCTGATGGATCCAGCACTGGATGATAGTGACACTACTAGTAGTAGTATGCATACAGTGCCAAGATATGTGAACATAGGACTTCTCTGTGTTCAAGAAAGTCCAGCAGATAGACCAACCATGTCTGATGTTGTATCAATGATTGGGAACGATACTGTGGCCCTTCCTTCTCCTAAACCACCTGCATTTCTAAATGTGAGAGGTAATCAAAATTCAATATTGCCCGCTAGCATGCCAGAAAGCTTTTCTTTGAATTTGATCACAGATACAATGGTGGAAGCAAGATGA 2505 0.4024 MAFTSALTSLTTLVCLCMFCVNATTHKEILQTGQSLGTSDTLLSYGGNFELGFFSKDNSTKYYVGIWYKRVPNDKIVWVANRDSPVQTSSAVLIIQPDGNFMIIDGQKTYRVNKASNNFSTYATLLDSGNLVLLNTSNRAILWQSFDDPTDTLIPGMNLGYNSGNFRSLRSWTSADDPAPGEFSLNYGSGAASLIIYNGTDVFWRDDNYNDTYNGMEDYFTWSVDNDSRLVLEVSGELIKESWSEEAKRWVSIRSSKCGTENSCGVFSICNPQAHDPCDCLHGFQPLHADSWRNGNTSAGCVRKIELSCSNRSSNNVKSNDGFFQFNKVQLPQTSNGYIKLKIDRARECESACSRNCSCVAYAYYLNSSICQLWHGQVLSLKNISTYLDNSDNTNPIFYLRLDASELVTADSNPTNATELATDFRKHENLLRNLLLIVILILLLAFLILGLLVYWTRRQRRKGEDLLRFHVSMSMKVEDSELTEAHRGAKVKKKEVKLPLFSFVSVAAATNNFSDANKLGEGGFGPVYKGILLNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRDEKMLIYELMPNKSLDVFLFDATKRRMLDWGTRVRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFGDNELQANTNRIVGTYGYMSPEYAMEGLFSIKSDVFSFGVLLLEILSGKKNTGFYQTNSFNLLGYAWDLWTNNSGMDLMDPALDDSDTTSSSMHTVPRYVNIGLLCVQESPADRPTMSDVVSMIGNDTVALPSPKPPAFLNVRGNQNSILPASMPESFSLNLITDTMVEAR* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2129 834 SUPERFAMILY Protein kinase-like (PK-like) 496 786 IPR011009 -
Gso6g2129 834 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Gso6g2129 834 PIRSF SRK 1 834 IPR024171 GO:0004674
Gso6g2129 834 ProSiteProfiles Protein kinase domain profile. 513 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2129 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 178 IPR036426 -
Gso6g2129 834 SUPERFAMILY Hairpin loop containing domain-like 322 380 - -
Gso6g2129 834 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 ISOFORM X1 24 831 - -
Gso6g2129 834 SMART ntp_6 318 394 IPR003609 -
Gso6g2129 834 Pfam S-locus glycoprotein domain 209 286 IPR000858 GO:0048544
Gso6g2129 834 CDD STKc_IRAK 519 787 - -
Gso6g2129 834 SMART serkin_6 513 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g2129 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Gso6g2129 834 SMART blect_4 33 149 IPR001480 -
Gso6g2129 834 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 831 - -
Gso6g2129 834 Gene3D Phosphorylase Kinase; domain 1 472 588 - -
Gso6g2129 834 Pfam D-mannose binding lectin 76 172 IPR001480 -
Gso6g2129 834 Pfam Protein tyrosine and serine/threonine kinase 517 786 IPR001245 GO:0004672|GO:0006468
Gso6g2129 834 CDD B_lectin 34 149 IPR001480 -
Gso6g2129 834 Pfam PAN-like domain 318 380 IPR003609 -
Gso6g2129 834 Gene3D Transferase(Phosphotransferase) domain 1 589 793 - -
Gso6g2129 834 Gene3D - 22 146 IPR036426 -
Gso6g2129 834 CDD PAN_AP_plant 307 402 - -
Gso6g2129 834 ProSiteProfiles PAN/Apple domain profile. 309 391 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2129 Gso-Chr6 40534827 40538798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2129 490 820 Receptor kinase-like Gene Family AT4G23250 57.864 5.16e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso6g2129 PK_Tyr_Ser-Thr 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2129 - - gmx:100811148 1633.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2129 6 40534827 40538798 Gso6g2129 6 40534827 40538798 ECH