Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2113 ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCTAAACACAAAAAGATACTGGAGGGACTTCTTAAACTACCAGAGAACAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCGAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCAACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTACGAAGAGAAGAGATGGGCTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTCCGAGAAGAGAAAAGTCCTTCACATTGGCAAAAGCCTGAGGAAACGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGGCCTGAGCTGGTAACTCCTATGGCAAAACCTCAACATGTTGAGAAAGTGGAACCTGTTGCACCACCACCACAAGCTGAAACTTCAAAACAGACCACTGAAACAACACAAAATTCCCCTCCAAAAGTTGACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGCAGCTAATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGGAAGCTGAGAAGACTGATGCCCCAAAAGCAATTGAGAGTACACCCCAGTCGACACGCCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTCCAGAAAAACCACAAAAAGATCTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAATGTGGTATCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCCAGCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGGTGGCACGGATTCCAAGTACCTGGCCAGCATACAAGAACCTGGGTCCAACATTCCTCTCCAAAGTTGGCTGGGTGCTGGCTACCCAATGCCTGGTGCAATGCCCATGGGTAGTCAGGAAGAGTTACAGAAACTCATGCAGACCGTGAACATGAATGCAGCCCATTCAGCTGGGAGTTCAGTTCAATATCCACCATCTAGCTACTATGCTATGGGACAAGTTGCTCCCTCTAATGGTTCCACGCCAACGGAAGCGAGCAAACCTCAATCAGCCTCTCCAGCATCATCGAACACTTCAAAGACAGGGAACGACTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAACACTGA 1455 0.4557 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPQHYDRVGIENFIRAKYEEKRWAARNEKPKSPSSFREEKSPSHWQKPEETKKIQPSNAIPATRISVPAPPKGPELVTPMAKPQHVEKVEPVAPPPQAETSKQTTETTQNSPPKVDYATDLFDMLSMDDPNEKGSGAANDNNWAGFQSAAEASEAEKTDAPKAIESTPQSTRQSTSGIEDLFKDSPSVTPSLTPEKPQKDLKNDIMSLFEKSNVVSPFAMHQQQLAMLAQQQSLLMAAAKSAGGDPKYLASLQQQQSLLMAAAAAKSGGTDSKYLASIQEPGSNIPLQSWLGAGYPMPGAMPMGSQEELQKLMQTVNMNAAHSAGSSVQYPPSSYYAMGQVAPSNGSTPTEASKPQSASPASSNTSKTGNDYDFSSLTQGMFAKH* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2113 484 MobiDBLite consensus disorder prediction 196 214 - -
Gso6g2113 484 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gso6g2113 484 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gso6g2113 484 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gso6g2113 484 MobiDBLite consensus disorder prediction 248 298 - -
Gso6g2113 484 CDD ArfGap 19 117 - -
Gso6g2113 484 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Gso6g2113 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 348 483 IPR044520 GO:0005096
Gso6g2113 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 354 IPR044520 GO:0005096
Gso6g2113 484 MobiDBLite consensus disorder prediction 123 215 - -
Gso6g2113 484 MobiDBLite consensus disorder prediction 262 295 - -
Gso6g2113 484 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Gso6g2113 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Gso6g2113 484 MobiDBLite consensus disorder prediction 123 150 - -
Gso6g2113 484 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Gso6g2113 484 MobiDBLite consensus disorder prediction 440 476 - -
Gso6g2113 484 PANTHER ARF GTPASE ACTIVATOR 1 354 - -
Gso6g2113 484 PANTHER ARF GTPASE ACTIVATOR 348 483 - -
Gso6g2113 484 SMART arf_gap_3 16 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2113 Gso-Chr6 40029133 40035948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2113 16 118 C2H2 Transcription Factor Family AT4G05330 50.450 2.35e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2113 K12486 - gmx:100815076 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2113 6 40029133 40035948 Gso6g2113 6 40029133 40035948 ECH